Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1380
(489 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F... 27 1.5
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 3.5
SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyce... 25 4.6
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 25 6.1
SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|ch... 25 6.1
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 25 6.1
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos... 25 8.1
SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr... 25 8.1
SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity prote... 25 8.1
SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2 |Sc... 25 8.1
SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit Git... 25 8.1
>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 537
Score = 27.1 bits (57), Expect = 1.5
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = -2
Query: 305 ADMGTNRRDISTYIPHLNFQGPQRVSGHRRKCGALRVPNHISL 177
A GT++ +IST +P P++VSGH A R+P+ S+
Sbjct: 371 ATNGTSQSNISTPLPEPTPGQPRKVSGHNPP-SARRLPSASSV 412
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 25.8 bits (54), Expect = 3.5
Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Frame = -1
Query: 213 MRCSSRSEPYLPSI-GFHGTRTLRQKRKLFPDLSAASSGHFGLPRRT 76
MR + E Y+ + G H T Q LF D + H L RRT
Sbjct: 1 MRPAKSVEGYIIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRT 47
>SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 351
Score = 25.4 bits (53), Expect = 4.6
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 360 FPYLHYSID*RLFTLETCCGYGYEPARHL 274
+P+ S+D R+F LE+ GY EP L
Sbjct: 159 YPFDLDSLDKRIFKLESKIGYADEPLSEL 187
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 25.0 bits (52), Expect = 6.1
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3
Query: 72 RVFDGVTQSGLKTPPRGPGRV 134
RVF G +SGLK +GP V
Sbjct: 399 RVFSGTVRSGLKVRIQGPNYV 419
>SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 632
Score = 25.0 bits (52), Expect = 6.1
Identities = 13/53 (24%), Positives = 23/53 (43%)
Frame = +2
Query: 8 PVPIPEPGSGTVSIIVPSSLKTSVRRGNPKWPEDAAERSGKSFLFCLSVRVPW 166
PV + G TV+ P+S+ + +P+ P A+ + CL + W
Sbjct: 132 PVSLEVRGRNTVTFYGPTSIFGTSFTSSPRPPPSASIEDTYPIIHCLQLFFKW 184
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 25.0 bits (52), Expect = 6.1
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3
Query: 72 RVFDGVTQSGLKTPPRGPGRV 134
RVF G +SGLK +GP V
Sbjct: 399 RVFSGTVRSGLKVRIQGPNYV 419
>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 24.6 bits (51), Expect = 8.1
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = +2
Query: 8 PVPI-PEPGSGTVSIIVPSSLKTSVRRGNPKWPEDAAERS 124
P+PI P+ ++ P+S TS R P P+D S
Sbjct: 338 PIPILPKMKDTSIPAAEPASSTTSARDQTPSTPKDVGSPS 377
>SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 904
Score = 24.6 bits (51), Expect = 8.1
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = -3
Query: 478 FFYIVYQTRHRPHPLPV 428
FF I+Y RH +P P+
Sbjct: 262 FFMILYSARHADNPAPI 278
>SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity protein
kinase Mph1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 678
Score = 24.6 bits (51), Expect = 8.1
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = -2
Query: 242 PQRVSGHRRKCGALRVPNHISLL*DSMELERSGRKENSSRTSRRRLQA 99
P VSGH LR+ IS SM +ERS R ++ + +
Sbjct: 617 PLPVSGHTNNAHPLRLSTEISASQLSMIIERSVELSKHKRLNKELIDS 664
>SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 334
Score = 24.6 bits (51), Expect = 8.1
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = +2
Query: 161 PWNPIEGRYGSEREEHRI 214
P+ P+EG Y + ++ HRI
Sbjct: 3 PYEPVEGLYVNAKQYHRI 20
>SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit
Git5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 305
Score = 24.6 bits (51), Expect = 8.1
Identities = 10/34 (29%), Positives = 17/34 (50%)
Frame = -1
Query: 177 SIGFHGTRTLRQKRKLFPDLSAASSGHFGLPRRT 76
++ GTR L+ K PD+ ++ G + L T
Sbjct: 8 NVNIQGTRVLKNKLGKIPDIDISTDGKYLLSAST 41
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,172,837
Number of Sequences: 5004
Number of extensions: 46652
Number of successful extensions: 144
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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