Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1378
         (663 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.13 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces...    26   5.6  
SPAC3A12.02 |||inorganic pyrophosphatase|Schizosaccharomyces pom...    26   5.6  
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz...    25   7.4  
SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family protein|Schizosaccha...    25   9.7  
SPBC2G5.01 |||DUF1682 family protein|Schizosaccharomyces pombe|c...    25   9.7  
SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces...    25   9.7  

>SPAC343.13 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 526

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 290 LQNLIGARRLSNSLRHEVEATI 225
           L+NL   R + NS+RHEV+  +
Sbjct: 246 LKNLSNVRNVVNSIRHEVDRQV 267


>SPAC3A12.02 |||inorganic pyrophosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 286

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = +1

Query: 397 ICMIYSLINLKVRTYTYAYFIY-NKKPFLYYNDIPINYYTE*YNTPLKPLKYAINKTRIN 573
           I    S I  K+ T  +  + Y N KP  +++D+P+    + +N   +  ++   K  I+
Sbjct: 8   ILQFRSKITGKLNTPDFRVYCYKNNKPISFFHDVPLTSDKDTFNMVTEIPRWTQAKCEIS 67

Query: 574 L 576
           L
Sbjct: 68  L 68


>SPCC1795.08c |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 985

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = -1

Query: 210 THDELLTERYISSLAINTETKEKKISIVNSIYYFYSVL 97
           +H+E   E+ +S   +N     K +SI      FY+ +
Sbjct: 546 SHEETFNEQIVSHFNLNDNNNNKVLSIPRDSLQFYNAV 583


>SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
 Frame = -2

Query: 641 INLSIHALVFYYYNLLT---ILMYSKLI-RVLLIAYFRGLRGVLYHSV 510
           INL +H  ++YYY L+     + + K + R  ++ +F  L G +Y +V
Sbjct: 173 INLLVHVTMYYYYYLVAKGIRVPWKKWVTRFQIVQFFADL-GFIYFAV 219


>SPBC2G5.01 |||DUF1682 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 374

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +1

Query: 37  WRPLRISFLYFKLFYIYVLN*HTVKVIN-AIYNRYF 141
           WR  R+ F+    F++YV +  T K  N  I +R++
Sbjct: 46  WRDFRLEFVILACFFLYVFSFITQKKKNQKIASRWY 81


>SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 219 KYNCSFDLMSKAVG*STGSDEVLQP 293
           K N SFD ++  VG STG+ E   P
Sbjct: 308 KSNKSFDQLNNLVGLSTGNSENFTP 332


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,695,925
Number of Sequences: 5004
Number of extensions: 56602
Number of successful extensions: 137
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)