Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1378
         (663 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83239-8|CAH60787.1|  311|Caenorhabditis elegans Hypothetical pr...    30   1.3  
Z70686-3|CAA94611.1|  364|Caenorhabditis elegans Hypothetical pr...    29   2.9  
Z68748-12|CAN86588.1|  792|Caenorhabditis elegans Hypothetical p...    28   6.8  
Z68748-10|CAL36500.1|  789|Caenorhabditis elegans Hypothetical p...    28   6.8  
Z68748-9|CAL36499.1|  796|Caenorhabditis elegans Hypothetical pr...    28   6.8  
AF040643-1|AAB94960.1|  998|Caenorhabditis elegans Hypothetical ...    28   6.8  

>Z83239-8|CAH60787.1|  311|Caenorhabditis elegans Hypothetical
           protein T09F5.16 protein.
          Length = 311

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = +1

Query: 67  FKLFYIYVLN*HTVKVINAIYNRYFFF-LCLSIYGKTRYISL 189
           F +F  +  +   ++++NAIY  YFFF L ++ +G T ++ L
Sbjct: 45  FPVFNHFYKSIKKIQIVNAIYILYFFFTLFMAFFGATFFVFL 86


>Z70686-3|CAA94611.1|  364|Caenorhabditis elegans Hypothetical
           protein R10H10.3 protein.
          Length = 364

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 7/62 (11%)
 Frame = +1

Query: 394 EICMIYSLINLKVRTYTYAYFIYNKKPFLYYND----IPIN---YYTE*YNTPLKPLKYA 552
           +I ++  ++NL V  Y     I+N    +  ND     P+N   YY    N+PL P  Y 
Sbjct: 4   QILLVAIILNLGVSAYKKKSLIHNHDKVIVSNDDFIGCPVNNDFYYNGTINSPLYPYNYP 63

Query: 553 IN 558
            N
Sbjct: 64  PN 65


>Z68748-12|CAN86588.1|  792|Caenorhabditis elegans Hypothetical
           protein F13H10.4c protein.
          Length = 792

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +1

Query: 421 NLKVRTYTYAYFIYNKKPFLYYNDIPINYYTE*YNTPLKPLKYAINK 561
           N K++T         K P   Y+D  ++  T+ YN P +PL Y +N+
Sbjct: 224 NTKLQTSHSVMLTDEKIPIDRYHDFVVDN-TQAYNAPNQPLNYILNE 269


>Z68748-10|CAL36500.1|  789|Caenorhabditis elegans Hypothetical
           protein F13H10.4b protein.
          Length = 789

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +1

Query: 421 NLKVRTYTYAYFIYNKKPFLYYNDIPINYYTE*YNTPLKPLKYAINK 561
           N K++T         K P   Y+D  ++  T+ YN P +PL Y +N+
Sbjct: 224 NTKLQTSHSVMLTDEKIPIDRYHDFVVDN-TQAYNAPNQPLNYILNE 269


>Z68748-9|CAL36499.1|  796|Caenorhabditis elegans Hypothetical
           protein F13H10.4a protein.
          Length = 796

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +1

Query: 421 NLKVRTYTYAYFIYNKKPFLYYNDIPINYYTE*YNTPLKPLKYAINK 561
           N K++T         K P   Y+D  ++  T+ YN P +PL Y +N+
Sbjct: 231 NTKLQTSHSVMLTDEKIPIDRYHDFVVDN-TQAYNAPNQPLNYILNE 276


>AF040643-1|AAB94960.1|  998|Caenorhabditis elegans Hypothetical
            protein F14D2.6 protein.
          Length = 998

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +1

Query: 403  MIYSLIN-LKVRTYTYAYFIYNKKPFLYYNDIP 498
            +IYS ++  K++  TY+  IYNK+P     D+P
Sbjct: 913  IIYSQMSCFKLQNLTYSVVIYNKQPCKSLPDVP 945


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,534,876
Number of Sequences: 27780
Number of extensions: 305365
Number of successful extensions: 671
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)