Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1377
         (336 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein Mfr1|Schizosa...    28   0.44 
SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p...    27   1.0  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    26   1.8  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    25   2.3  
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc...    25   4.1  
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces...    25   4.1  
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    24   5.4  
SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr 1||...    24   7.1  
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar...    24   7.1  
SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase |Schiz...    24   7.1  
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch...    24   7.1  
SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomy...    23   9.4  
SPCC320.09 |hem15||ferrochelatase|Schizosaccharomyces pombe|chr ...    23   9.4  

>SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein
           Mfr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 421

 Score = 27.9 bits (59), Expect = 0.44
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +3

Query: 99  SSAFGVLHRPVDPGSVGHAAALDWAGRGTFIDVATSVG 212
           S+A G + +  D G+  H  ++ W G+GT + V T  G
Sbjct: 151 SAASGKVVQLHDFGATNHVTSVLWTGKGTQLAVGTDSG 188


>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1028

 Score = 26.6 bits (56), Expect = 1.0
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = -3

Query: 268 SPSSEHRCAPIPPLTGAHHPTLVATSMNVPRPAQSRAAACPTLPGST 128
           +PS    C P+ PL      T+   + N+  P+ +   ACP+   ++
Sbjct: 47  TPSPNSECRPLTPLNSPFRRTVEGDTANLQAPSPT---ACPSFDSAS 90


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 25.8 bits (54), Expect = 1.8
 Identities = 10/26 (38%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = -3

Query: 211 PTLVA-TSMNVPRPAQSRAAACPTLP 137
           PT+++ T  N+PRP   +++A P +P
Sbjct: 138 PTILSSTDSNIPRPGTVKSSASPFVP 163


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 25.4 bits (53), Expect = 2.3
 Identities = 11/44 (25%), Positives = 19/44 (43%)
 Frame = -3

Query: 253  HRCAPIPPLTGAHHPTLVATSMNVPRPAQSRAAACPTLPGSTGR 122
            +R  P+PP            +++VP P+    +  P LP  + R
Sbjct: 1017 NRVVPLPPTASQRASAYEPPTVSVPSPSALSPSVTPQLPPVSSR 1060


>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
           binuclear cluster type |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 522

 Score = 24.6 bits (51), Expect = 4.1
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = -3

Query: 244 APIPPLTGAHHPTLVATSMNVPRPAQSRAAACPTLPGSTGR 122
           AP+PP    + PT   ++ N+     S AA+ P +  + G+
Sbjct: 79  APVPPAGNTNTPTTSNSNQNLENNVTS-AASMPAILNAAGQ 118


>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 24.6 bits (51), Expect = 4.1
 Identities = 15/54 (27%), Positives = 22/54 (40%)
 Frame = -3

Query: 262 SSEHRCAPIPPLTGAHHPTLVATSMNVPRPAQSRAAACPTLPGSTGR*RTPNAE 101
           ++++  A  PP      P   A +  V  P  + AAA P  P +      P AE
Sbjct: 357 AAQYPQAAFPPPPVMPQPAAAAVTTPVAAPVAAAAAAVPVPPPAPAPAAAPAAE 410


>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 24.2 bits (50), Expect = 5.4
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -3

Query: 250 RCAPIPPLTGAHHPTLVATSMNVP 179
           R  P+ P + + HP+L +  ++VP
Sbjct: 256 RALPLAPASNSQHPSLSSQPVSVP 279


>SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 469

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -1

Query: 120 EELRTQNYFTQGIYFHHLVFKSVRSQQELSRE 25
           E  RT+   + GI   H VF+ V    +L  E
Sbjct: 358 EAYRTERLLSSGISQDHSVFREVNPSAKLEEE 389


>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 902

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +3

Query: 138 GSVGHAAALDWAGRGTFIDVATSVG 212
           G V +A   D   RGT   V TSVG
Sbjct: 31  GHVSNAVPFDIEARGTHFLVTTSVG 55


>SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = +3

Query: 186 FIDVATSVGWWAPVRGGIGAHRCSEDGDTQGRVPAVLAALTKS 314
           FID A S+G   P  GGI    C   G +   V  ++   TKS
Sbjct: 361 FIDEAHSIGAIGPRGGGI----CDYFGISTDHVDILMGTFTKS 399


>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 815

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = -1

Query: 102 NYFTQGIYFHHLVFKSVRSQQELSRE 25
           NY TQ +  HH  F   RS   L  E
Sbjct: 712 NYHTQAVSIHHPSFYISRSDVPLEEE 737


>SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 589

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 77  KYMPWVK*FCVRSSSS 124
           KY+PW K + V SS+S
Sbjct: 38  KYLPWTKKWLVLSSNS 53


>SPCC320.09 |hem15||ferrochelatase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 384

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 10/19 (52%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
 Frame = -3

Query: 307 VNA-ASTAGTLPWVSPSSE 254
           VNA  S  G LPW+SP+++
Sbjct: 263 VNAWQSKVGPLPWMSPATD 281


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,400,492
Number of Sequences: 5004
Number of extensions: 28642
Number of successful extensions: 86
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)