Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1377
(336 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 29 1.1
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 28 1.4
AC024751-7|AAK21507.2| 1258|Caenorhabditis elegans Hypothetical ... 28 1.4
Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical pr... 27 2.5
AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein... 27 2.5
U61950-6|AAC24291.1| 528|Caenorhabditis elegans Nuclear hormone... 27 3.3
AF273791-1|AAG15139.1| 525|Caenorhabditis elegans nuclear recep... 27 3.3
AF273790-1|AAG15138.1| 534|Caenorhabditis elegans nuclear recep... 27 3.3
AF273787-1|AAG15135.1| 527|Caenorhabditis elegans nuclear recep... 27 3.3
U53344-2|AAP13769.1| 301|Caenorhabditis elegans Collagen protei... 27 4.4
U53344-1|AAA96223.1| 363|Caenorhabditis elegans Collagen protei... 27 4.4
U39644-4|AAA80357.2| 301|Caenorhabditis elegans Collagen protei... 27 4.4
U39644-3|AAA80358.2| 301|Caenorhabditis elegans Collagen protei... 27 4.4
U38378-4|AAA79749.1| 502|Caenorhabditis elegans Hypothetical pr... 27 4.4
AF098999-2|AAC68728.3| 369|Caenorhabditis elegans Hypothetical ... 27 4.4
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr... 26 5.8
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p... 26 5.8
AF099925-12|AAC69509.1| 257|Caenorhabditis elegans Hypothetical... 26 5.8
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 28.7 bits (61), Expect = 1.1
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = -3
Query: 241 PIPPLTGAHHPTLVATSMNVPRPAQSRAAACPTLPGSTG 125
P PP G H +TS + PRPA ++ P P G
Sbjct: 511 PPPPAPGPHKEQRRSTSKDPPRPAPPPVSSIPPPPPIAG 549
>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical protein
K06A9.1b protein.
Length = 2232
Score = 28.3 bits (60), Expect = 1.4
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Frame = -3
Query: 298 ASTAGTLPWVSPSSEHRCAPIPPLTGAHHPTLVATSMNVPRPAQSRAAACPTLPG---ST 128
+ST+G+ S SS +P+P + + +P+ +S P P+QS + T G S
Sbjct: 1241 SSTSGSSSATSLSSS---SPVPSTSQSPNPSTSGSSTPTPNPSQSTSPVVSTTTGEMTSH 1297
Query: 127 GR*RTPN 107
G +TP+
Sbjct: 1298 GSTQTPS 1304
>AC024751-7|AAK21507.2| 1258|Caenorhabditis elegans Hypothetical
protein Y18H1A.3 protein.
Length = 1258
Score = 28.3 bits (60), Expect = 1.4
Identities = 24/73 (32%), Positives = 34/73 (46%)
Frame = -3
Query: 280 LPWVSPSSEHRCAPIPPLTGAHHPTLVATSMNVPRPAQSRAAACPTLPGSTGR*RTPNAE 101
LP PS R +P P A +++ TS P+P + +AA LP TPNA+
Sbjct: 954 LPDYPPS---RGSPSPVDGAAQFTSMIETSRRQPQPLGTSSAAHDHLPAF-----TPNAK 1005
Query: 100 LFHPRHILSSSRF 62
L R + +S F
Sbjct: 1006 LLEWRSLSASLGF 1018
>Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical protein
C10C6.1 protein.
Length = 1565
Score = 27.5 bits (58), Expect = 2.5
Identities = 30/99 (30%), Positives = 43/99 (43%), Gaps = 4/99 (4%)
Frame = -3
Query: 304 NAASTAGTLPWVSPSSEHRCAPIPPLTGAHH---PTLVATSMNVPRPAQ-SRAAACPTLP 137
+ AS TLP +PS+ R A P + A + + ATS + Q S++ A L
Sbjct: 1395 SVASAPATLPSTTPSNLSRMASSSPSSSASNSGTSSPAATSSGISIVKQKSQSIAVSPLA 1454
Query: 136 GSTGR*RTPNAELFHPRHILSSSRF*KRPQSTRTQPRGS 20
T R R+P+ H H +SS + RP T S
Sbjct: 1455 RDT-RMRSPSPS--HLHHRPASSSYTTRPDGVVTPATSS 1490
>AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein
protein.
Length = 1565
Score = 27.5 bits (58), Expect = 2.5
Identities = 30/99 (30%), Positives = 43/99 (43%), Gaps = 4/99 (4%)
Frame = -3
Query: 304 NAASTAGTLPWVSPSSEHRCAPIPPLTGAHH---PTLVATSMNVPRPAQ-SRAAACPTLP 137
+ AS TLP +PS+ R A P + A + + ATS + Q S++ A L
Sbjct: 1395 SVASAPATLPSTTPSNLSRMASSSPSSSASNSGTSSPAATSSGISIVKQKSQSIAVSPLA 1454
Query: 136 GSTGR*RTPNAELFHPRHILSSSRF*KRPQSTRTQPRGS 20
T R R+P+ H H +SS + RP T S
Sbjct: 1455 RDT-RMRSPSPS--HLHHRPASSSYTTRPDGVVTPATSS 1490
>U61950-6|AAC24291.1| 528|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 46, isoform a protein.
Length = 528
Score = 27.1 bits (57), Expect = 3.3
Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Frame = -3
Query: 259 SEHRCAPI-PPLTGAHHPTLVATSMNVPRPAQSRAAACPTLPGS 131
+ H +PI P T H P + + P QS PT PGS
Sbjct: 44 NSHYSSPIHQPPTSLHQPIPMMQNQFKASPPQSDQETAPTTPGS 87
>AF273791-1|AAG15139.1| 525|Caenorhabditis elegans nuclear receptor
NHR-46 protein.
Length = 525
Score = 27.1 bits (57), Expect = 3.3
Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Frame = -3
Query: 259 SEHRCAPI-PPLTGAHHPTLVATSMNVPRPAQSRAAACPTLPGS 131
+ H +PI P T H P + + P QS PT PGS
Sbjct: 41 NSHYSSPIHQPPTSLHQPIPMMQNQFKASPPQSDQETAPTTPGS 84
>AF273790-1|AAG15138.1| 534|Caenorhabditis elegans nuclear receptor
NHR-46 protein.
Length = 534
Score = 27.1 bits (57), Expect = 3.3
Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Frame = -3
Query: 259 SEHRCAPI-PPLTGAHHPTLVATSMNVPRPAQSRAAACPTLPGS 131
+ H +PI P T H P + + P QS PT PGS
Sbjct: 50 NSHYSSPIHQPPTSLHQPIPMMQNQFKASPPQSDQETAPTTPGS 93
>AF273787-1|AAG15135.1| 527|Caenorhabditis elegans nuclear receptor
NHR-46 protein.
Length = 527
Score = 27.1 bits (57), Expect = 3.3
Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Frame = -3
Query: 259 SEHRCAPI-PPLTGAHHPTLVATSMNVPRPAQSRAAACPTLPGS 131
+ H +PI P T H P + + P QS PT PGS
Sbjct: 43 NSHYSSPIHQPPTSLHQPIPMMQNQFKASPPQSDQETAPTTPGS 86
>U53344-2|AAP13769.1| 301|Caenorhabditis elegans Collagen protein
166, isoform b protein.
Length = 301
Score = 26.6 bits (56), Expect = 4.4
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +2
Query: 119 SSTGRSGKCWACGGSRLGRPG 181
SS G G C CG S G PG
Sbjct: 98 SSVGHQGGCCGCGVSAAGPPG 118
>U53344-1|AAA96223.1| 363|Caenorhabditis elegans Collagen protein
166, isoform a protein.
Length = 363
Score = 26.6 bits (56), Expect = 4.4
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +2
Query: 119 SSTGRSGKCWACGGSRLGRPG 181
SS G G C CG S G PG
Sbjct: 160 SSVGHQGGCCGCGVSAAGPPG 180
>U39644-4|AAA80357.2| 301|Caenorhabditis elegans Collagen protein
168 protein.
Length = 301
Score = 26.6 bits (56), Expect = 4.4
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +2
Query: 119 SSTGRSGKCWACGGSRLGRPG 181
SS G G C CG S G PG
Sbjct: 98 SSVGHQGGCCGCGVSAAGPPG 118
>U39644-3|AAA80358.2| 301|Caenorhabditis elegans Collagen protein
167 protein.
Length = 301
Score = 26.6 bits (56), Expect = 4.4
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +2
Query: 119 SSTGRSGKCWACGGSRLGRPG 181
SS G G C CG S G PG
Sbjct: 98 SSVGHQGGCCGCGVSAAGPPG 118
>U38378-4|AAA79749.1| 502|Caenorhabditis elegans Hypothetical
protein R11F4.1 protein.
Length = 502
Score = 26.6 bits (56), Expect = 4.4
Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = +3
Query: 165 DWAGRGTFIDVATSV-GWWAPVRGGIGAHRCSED 263
D GR T + GW A V GGIGA + S D
Sbjct: 429 DIMGRDIVTPKITEISGWGAAVAGGIGAQQISLD 462
>AF098999-2|AAC68728.3| 369|Caenorhabditis elegans Hypothetical
protein W04C9.5 protein.
Length = 369
Score = 26.6 bits (56), Expect = 4.4
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -2
Query: 182 APAGPI*SRRMPNTSRIDRSMKNSERRTISPK 87
+PA P +RR TS I R S RT+SP+
Sbjct: 26 SPASPAATRRSLPTSPISRRSLPSTPRTVSPR 57
>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 26.2 bits (55), Expect = 5.8
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -1
Query: 153 HAQHFPDRPVDEELRTQNYFTQGIYFHHLVFKSVRSQQ 40
+A+ RP E T +QG+Y+ V K VR++Q
Sbjct: 207 YARRMCKRPYRSEKSTAISDSQGVYYDGQVLKGVRAKQ 244
>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 26.2 bits (55), Expect = 5.8
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -1
Query: 153 HAQHFPDRPVDEELRTQNYFTQGIYFHHLVFKSVRSQQ 40
+A+ RP E T +QG+Y+ V K VR++Q
Sbjct: 207 YARRMCKRPYRSEKSTAISDSQGVYYDGQVLKGVRAKQ 244
>AF099925-12|AAC69509.1| 257|Caenorhabditis elegans Hypothetical
protein K01A2.10 protein.
Length = 257
Score = 26.2 bits (55), Expect = 5.8
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = -3
Query: 295 STAGTLPWVSPSSEHRCAPIPPLTGAHHPTLVATSMNVPRPAQSR 161
ST + P SPSS HR PP++ L++ S+ V P SR
Sbjct: 201 STTSSPPMTSPSSPHRI--FPPVSSG----LLSASVAVTYPGNSR 239
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,144,568
Number of Sequences: 27780
Number of extensions: 183605
Number of successful extensions: 618
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 617
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 418861482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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