Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1375
         (372 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos...    28   0.41 
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact...    27   0.71 
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ...    26   2.2  
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf...    26   2.2  
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc...    25   2.9  
SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein Usp105|Schi...    25   3.8  
SPBC1861.09 |ppk22||serine/threonine protein kinase Ppk22 |Schiz...    25   3.8  
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po...    24   8.8  
SPAC19G12.03 |cda1||chitin deacetylase Cda1|Schizosaccharomyces ...    24   8.8  
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    24   8.8  

>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
            orphan|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1563

 Score = 28.3 bits (60), Expect = 0.41
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +1

Query: 1    GSASRRSSTAPGVSGT-TAATEARTSGPTSGSRGTASPLRRTTEDTSDRMAT 153
            GS    ++ A G +GT T  T A    PT+G+ GTA    + T  T  +  T
Sbjct: 1143 GSEVLPTTGATGTAGTETQLTTATEVQPTTGATGTAGTETQVTTGTETQATT 1194



 Score = 27.5 bits (58), Expect = 0.71
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +1

Query: 28   APGVSGT-TAATEARTSGPTSGSRGTASPLRRTTEDTSDRMAT 153
            A G +GT T AT A    PT+G+ GTA    + T  T  +  T
Sbjct: 1212 ATGTAGTETQATTATEVQPTTGATGTAGTETQVTTATEVQPTT 1254



 Score = 27.5 bits (58), Expect = 0.71
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +1

Query: 28   APGVSGT-TAATEARTSGPTSGSRGTASPLRRTTEDTSDRMAT 153
            A G +GT T  T A    PT+G+ GTA    + T  T  +  T
Sbjct: 1234 ATGTAGTETQVTTATEVQPTTGATGTAGTETQVTTGTETQATT 1276



 Score = 27.5 bits (58), Expect = 0.71
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +1

Query: 28   APGVSGT-TAATEARTSGPTSGSRGTASPLRRTTEDTSDRMAT 153
            A G +GT T AT A    PT+G+ GTA    + T  T  +  T
Sbjct: 1294 ATGTAGTETQATTATEVQPTTGATGTAGTETQVTTATEVQPTT 1336



 Score = 27.5 bits (58), Expect = 0.71
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +1

Query: 28   APGVSGT-TAATEARTSGPTSGSRGTASPLRRTTEDTSDRMAT 153
            A G +GT T  T A    PT+G+ GTA    + T  T  +  T
Sbjct: 1316 ATGTAGTETQVTTATEVQPTTGATGTAGTETQVTTGTETQATT 1358


>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
           complex associated protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 710

 Score = 27.5 bits (58), Expect = 0.71
 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +1

Query: 4   SASRRSSTAPGVSGTTAATE-ARTSGPTSGSRGTASPLRRTTEDTSDRMATVMS 162
           S S+       +SGT+     A ++ PTS S  T +PL +   + S  ++++M+
Sbjct: 381 SNSKSKKKVTSISGTSFFKNLASSTKPTSASSSTKAPLTKQQTNPSTPLSSIMA 434


>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1026

 Score = 25.8 bits (54), Expect = 2.2
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -2

Query: 320 KVHSVRVEAEALVGSVDGHRNWXVLEDRQLERLLI 216
           K++ +R+    +V +  GH +W +L   + E LLI
Sbjct: 131 KIYLIRISNFQIVATWTGHEDWPILFPFKDEALLI 165


>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
           Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1339

 Score = 25.8 bits (54), Expect = 2.2
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = +3

Query: 210 TNDEKALKLAIFKHGPISVAIDASHKSFSFYANGVYFEPKCKNKVEELDHAVL 368
           ++ + ++ L    H P+SV    SH + S  AN  +  P  K ++E +D   L
Sbjct: 611 SDSQSSIDLDSSFHYPVSVDSQLSHSTGSLMAN--FSSPTKKRRLESVDFIFL 661


>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1573

 Score = 25.4 bits (53), Expect = 2.9
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 204 VTTNDEKALKLAIFKHGPISVAID 275
           ++ ND K  K A FKH P+   I+
Sbjct: 327 ISVNDPKVKKYASFKHCPVEKLIE 350


>SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein
           Usp105|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 25.0 bits (52), Expect = 3.8
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 107 EAVPLDPLVGPEVLASVAAVVPETPGAV 24
           ++ P+  L+ P+VLAS+ A V   P  V
Sbjct: 190 QSQPIQQLLPPDVLASIRADVTREPAKV 217


>SPBC1861.09 |ppk22||serine/threonine protein kinase Ppk22
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 526

 Score = 25.0 bits (52), Expect = 3.8
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 54  CDGGEDFRAYEWIKRHGLPTEE 119
           C GGE FRA   + +H LP ++
Sbjct: 235 CAGGEFFRALHSLPKHILPEKD 256


>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 507

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = +1

Query: 4   SASRRSSTAPGVSGTTAATEARTSGPTSGSRGTASPLRRTTEDTSDRM 147
           S S  +ST+   S T+A + + TSG +  S    S        TSD +
Sbjct: 235 SESTPASTSYASSTTSATSTSTTSGSSGSSDWGRSSFYEADSGTSDNI 282


>SPAC19G12.03 |cda1||chitin deacetylase Cda1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 320

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 51  GCDGGEDFRAYEWIKRHGLPTEEDY 125
           GC+ G    ++ WI   G+P E +Y
Sbjct: 120 GCEVGS--HSHRWINYEGVPPETEY 142


>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 860

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +1

Query: 1   GSASRRSSTAPGVSGTTAATEARTSGPTSGSRGTASP 111
           GS+     TAPG      + E   S PT  S GT+SP
Sbjct: 149 GSSVTGKRTAPGNPWAIRSAERLASNPT--SIGTSSP 183


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.121    0.367 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,402,670
Number of Sequences: 5004
Number of extensions: 24533
Number of successful extensions: 74
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 118158644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)