Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1373
         (526 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa...    26   3.0  
SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual    26   4.0  
SPAC1F7.12 |yak3|yakC, SPAC21E11.01|aldose reductase YakC|Schizo...    26   4.0  
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    25   5.2  
SPBC8D2.16c |||DUF171 family protein|Schizosaccharomyces pombe|c...    25   6.9  
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb...    25   9.1  

>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 367 GWRYQEVLANSLATWSHLMTHKVREAR 287
           GWR  E+L+ SL+  S  +  K RE R
Sbjct: 827 GWRSPEILSGSLSQQSKEIQVKTREGR 853


>SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 613

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -2

Query: 453 SNIRH*LVIEHSSVSLSN 400
           SN+RH  + EHSS++ SN
Sbjct: 423 SNVRHLKIAEHSSLAYSN 440


>SPAC1F7.12 |yak3|yakC, SPAC21E11.01|aldose reductase
           YakC|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 340

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -1

Query: 289 RYSTETPVYQSLAVIQCVVETGKARH 212
           R+S ETP+ + +  ++  VE GK R+
Sbjct: 127 RFSGETPIEKIMGALKKCVEAGKIRY 152


>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/25 (44%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
 Frame = -3

Query: 83  SPV*FYNNK-QQIPNIRYAIYSDFD 12
           +P  F +N+  Q+PN  Y+IYS+F+
Sbjct: 299 TPAKFDSNRISQVPNSDYSIYSNFN 323


>SPBC8D2.16c |||DUF171 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 315

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 356 PGGAGELAGDVVALDDPQGEGG 291
           P   G+L GD+V+   P+ +GG
Sbjct: 183 PNEEGQLQGDIVSFSAPREKGG 204


>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 929

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +1

Query: 94  MSNLCSRIVSKPQKRLQDSRDSMSVAQTNTWMNAENIN 207
           + NL + IVS  QKR +D  D+ SV  ++   + E I+
Sbjct: 225 LDNLRNYIVSLNQKRKKDEADAESVLSSDDNDSIEEIS 262


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,155,084
Number of Sequences: 5004
Number of extensions: 42157
Number of successful extensions: 113
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)