Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1373
(526 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0828 + 6462702-6463028,6463207-6463683 30 1.3
05_03_0604 - 16132173-16132391,16132488-16132556,16132824-161328... 29 1.7
03_05_0991 + 29522483-29522614,29523091-29523159,29523369-295234... 29 3.0
03_01_0555 + 4132630-4132923,4133514-4133771,4134125-4134249,413... 29 3.0
05_01_0437 + 3471154-3471447,3471664-3471858,3472619-3472741,347... 28 5.3
02_02_0253 - 8325437-8325628,8325705-8325779,8325933-8326037,832... 27 7.0
11_01_0420 - 3230936-3231710,3232265-3233885,3234411-3234834 27 9.2
03_02_0156 - 5981080-5982189,5982227-5982247,5983308-5983337 27 9.2
01_01_0154 - 1355601-1356102,1356197-1356389,1356465-1356520,135... 27 9.2
>01_01_0828 + 6462702-6463028,6463207-6463683
Length = 267
Score = 29.9 bits (64), Expect = 1.3
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
Frame = -3
Query: 461 TIKVISDISWLLNIAAFLSRTVGFV------ACQLGSRVAVPGGAGELAGDVVALDDPQG 300
T++ + + ++ AA L+ VG V A ++G R VP GA E+A D + G
Sbjct: 99 TLRTMVPCTDKMDKAALLAEVVGHVKKLKSAAARVGRRATVPSGADEVAVDEASATGGGG 158
Query: 299 EG 294
EG
Sbjct: 159 EG 160
>05_03_0604 -
16132173-16132391,16132488-16132556,16132824-16132898,
16132981-16133113,16133188-16133297,16133360-16133407,
16133657-16133983,16135006-16135233,16135360-16135689,
16135780-16136586
Length = 781
Score = 29.5 bits (63), Expect = 1.7
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +1
Query: 382 QATKPTVRERNAAMF-NNQLMSDITFIVGAPGHTKIIPAHKYVLAT 516
Q +K + +R A F N SD F+VG+ K++PAHK VL +
Sbjct: 188 QESKDGLDQRALANFLENWDFSDSIFVVGS--ERKVVPAHKVVLGS 231
>03_05_0991 +
29522483-29522614,29523091-29523159,29523369-29523410,
29524409-29524540,29524832-29525023,29525134-29525166
Length = 199
Score = 28.7 bits (61), Expect = 3.0
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +1
Query: 94 MSNLCSRIVSKPQKRLQDSRDSMSVAQTNTWMNAENINNGGGLS 225
M C+R V++ ++ + + QT +W NA N +N G S
Sbjct: 60 MGKPCARQVAQVRRSVDWVYSQFNKMQTTSWRNASNSSNRGSFS 103
>03_01_0555 +
4132630-4132923,4133514-4133771,4134125-4134249,
4134789-4134990,4135172-4135297,4135404-4135660,
4135968-4136075,4136142-4136310,4136378-4136543,
4136967-4136998,4137256-4137579,4137683-4137757,
4138093-4138162,4138228-4138385,4138872-4139021
Length = 837
Score = 28.7 bits (61), Expect = 3.0
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = -1
Query: 370 PGWRYQEVLANSL--ATWSHLMTHKVREARYSTETPVY 263
P W QE L + A W +LMT+++ + ETPV+
Sbjct: 384 PEWSPQESLPERVIGAMWLYLMTYRLADEEKIDETPVW 421
>05_01_0437 +
3471154-3471447,3471664-3471858,3472619-3472741,
3473245-3473430,3473633-3473766,3473866-3474052,
3474179-3474280
Length = 406
Score = 27.9 bits (59), Expect = 5.3
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3
Query: 389 VACQLGSRVAVPGGAGELAGDVVALD 312
+A L S A PGG G +GD A+D
Sbjct: 58 IAAVLSSAAAAPGGGGGGSGDAAAVD 83
>02_02_0253 -
8325437-8325628,8325705-8325779,8325933-8326037,
8326249-8326374,8326451-8326835,8326931-8327208,
8327294-8327367,8327476-8327547,8327637-8327705,
8340132-8340201,8340806-8340873,8341571-8341643,
8341807-8341868,8342168-8342198
Length = 559
Score = 27.5 bits (58), Expect = 7.0
Identities = 14/52 (26%), Positives = 30/52 (57%)
Frame = +1
Query: 115 IVSKPQKRLQDSRDSMSVAQTNTWMNAENINNGGGLSLSPPHTVSQRETGTQ 270
++++ ++ LQD+ MS+A+ N W N + + GG L+ T+ Q+ + +
Sbjct: 385 VLNEVERNLQDA---MSMAR-NIWKNPKLLPGGGATELTVSATLKQKSSSVE 432
>11_01_0420 - 3230936-3231710,3232265-3233885,3234411-3234834
Length = 939
Score = 27.1 bits (57), Expect = 9.2
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -2
Query: 237 WWRQGKPATIVNIFCIHPSIGLR 169
WW GKP T N+ +H + G R
Sbjct: 606 WWASGKPDTDDNLSSVHINDGTR 628
>03_02_0156 - 5981080-5982189,5982227-5982247,5983308-5983337
Length = 386
Score = 27.1 bits (57), Expect = 9.2
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +1
Query: 118 VSKPQKRLQDSRDSMSVAQTNTWMNAENI 204
+S+P K + DS +V +T W N NI
Sbjct: 21 LSEPSKEAASADDSSAVQKTGAWSNTLNI 49
>01_01_0154 -
1355601-1356102,1356197-1356389,1356465-1356520,
1356997-1357066,1357188-1357314,1357418-1357695,
1357908-1358065,1358166-1358246,1358339-1358410,
1358531-1358602,1358729-1358867,1358987-1360045,
1360170-1360257
Length = 964
Score = 27.1 bits (57), Expect = 9.2
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +3
Query: 216 RAFPVSTTHCITARDWYTGVSVL*RAS 296
RAFP +C TAR G+ L RAS
Sbjct: 85 RAFPDGARNCYTARSLAPGIKYLIRAS 111
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,351,780
Number of Sequences: 37544
Number of extensions: 297613
Number of successful extensions: 826
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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