Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1372
(301 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 107 3e-25
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 107 3e-25
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 81 5e-17
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 52 1e-08
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 43 8e-06
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 39 2e-04
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 36 0.001
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 31 0.027
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 31 0.027
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 31 0.027
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 31 0.027
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 29 0.19
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 26 1.0
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 25 1.8
SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c... 25 1.8
SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 3.1
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 24 5.5
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 24 5.5
SPAC9.08c |||steroid reductase |Schizosaccharomyces pombe|chr 1|... 24 5.5
SPBC1105.18c ||SPBC887.21c|peptide release factor|Schizosaccharo... 23 7.3
SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosacchar... 23 7.3
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha... 23 7.3
SPAC30C2.02 |mmd1||deoxyhypusine hydroxylase |Schizosaccharomyce... 23 9.6
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 107 bits (257), Expect = 3e-25
Identities = 49/69 (71%), Positives = 60/69 (86%)
Frame = +1
Query: 94 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISM 273
N+RNMSVIAHVDHGKSTLTDSLV KAGII+ A+AG+ RF DTR DEQ+R +TIKSTAIS+
Sbjct: 18 NVRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTRADEQERGVTIKSTAISL 77
Query: 274 FFQLEEKDL 300
F ++ + D+
Sbjct: 78 FAEMTDDDM 86
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 107 bits (257), Expect = 3e-25
Identities = 49/69 (71%), Positives = 60/69 (86%)
Frame = +1
Query: 94 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISM 273
N+RNMSVIAHVDHGKSTLTDSLV KAGII+ A+AG+ RF DTR DEQ+R +TIKSTAIS+
Sbjct: 18 NVRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTRADEQERGVTIKSTAISL 77
Query: 274 FFQLEEKDL 300
F ++ + D+
Sbjct: 78 FAEMTDDDM 86
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 80.6 bits (190), Expect = 5e-17
Identities = 37/67 (55%), Positives = 52/67 (77%)
Frame = +1
Query: 85 SKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTA 264
++ NIRN +++AHVDHGK+TL DSL++ GII+ AG RF D R+DE R IT+KS+A
Sbjct: 15 NQENIRNFTLLAHVDHGKTTLADSLLASNGIISSKLAGTVRFLDFREDEITRGITMKSSA 74
Query: 265 ISMFFQL 285
IS+FF++
Sbjct: 75 ISLFFKV 81
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 52.4 bits (120), Expect = 1e-08
Identities = 25/64 (39%), Positives = 39/64 (60%)
Frame = +1
Query: 88 KRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAI 267
+ +RN +VIAH+DHGKSTL+D ++ G+I +F D + E+ R IT+K+
Sbjct: 55 QNRVRNWAVIAHIDHGKSTLSDCILKLTGVI-NEHNFRNQFLDKLEVERRRGITVKAQTC 113
Query: 268 SMFF 279
SM +
Sbjct: 114 SMIY 117
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 43.2 bits (97), Expect = 8e-06
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Frame = +1
Query: 85 SKRNIRNMSVIAHVDHGKSTLTDSLVSKAGI---IAGARAGETRFTDTRKDEQDRCITIK 255
S +IRN+ +IAH+D GK+TLT+ ++ G G+T D E+ R ITI
Sbjct: 24 SINSIRNVGIIAHIDAGKTTLTEKMLYYGGFTSHFGNVDTGDT-VMDYLPAERQRGITIN 82
Query: 256 STAISMFFQLEEKDL 300
S AIS ++ + +L
Sbjct: 83 SAAISFTWRNQRINL 97
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 38.7 bits (86), Expect = 2e-04
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Frame = +1
Query: 82 TSKRNIRNMSVIAHVDHGKSTLTDSLVSKAGI-IAGARAGETRFTDTRKDEQDRCITIKS 258
T ++R+ V H+ HGKS L D LV + R+TDT E++R ++IKS
Sbjct: 135 TGTDDVRSFIVAGHLHHGKSALLDLLVYYTHPDTKPPKRRSLRYTDTHYLERERVMSIKS 194
Query: 259 TAISM 273
T +++
Sbjct: 195 TPLTL 199
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 35.9 bits (79), Expect = 0.001
Identities = 19/55 (34%), Positives = 28/55 (50%)
Frame = +1
Query: 103 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAI 267
N+ I HVDHGK+TLT ++ + A + D +E+ R ITI S +
Sbjct: 55 NIGTIGHVDHGKTTLTAAITKCLSDLGQASFMDYSQIDKAPEEKARGITISSAHV 109
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 31.5 bits (68), Expect = 0.027
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = +1
Query: 103 NMSVIAHVDHGKSTLTDSLVSKAG 174
N+ VI HVD GKST T L+ K G
Sbjct: 9 NVVVIGHVDSGKSTTTGHLIYKCG 32
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 31.5 bits (68), Expect = 0.027
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Frame = +1
Query: 91 RNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAR--AGETRF---TDTRKDEQDRCITIK 255
+ IRN+ + AH+D GK+T T+ ++ G I G+ D + E+++ ITI+
Sbjct: 57 KQIRNIGISAHIDSGKTTFTERVLYYTGRIKDIHEVRGKDNVGAKMDFMELEREKGITIQ 116
Query: 256 STA 264
S A
Sbjct: 117 SAA 119
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 31.5 bits (68), Expect = 0.027
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = +1
Query: 103 NMSVIAHVDHGKSTLTDSLVSKAG 174
N+ VI HVD GKST T L+ K G
Sbjct: 9 NVVVIGHVDSGKSTTTGHLIYKCG 32
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 31.5 bits (68), Expect = 0.027
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = +1
Query: 103 NMSVIAHVDHGKSTLTDSLVSKAG 174
N+ VI HVD GKST T L+ K G
Sbjct: 9 NVVVIGHVDSGKSTTTGHLIYKCG 32
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 28.7 bits (61), Expect = 0.19
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Frame = +1
Query: 106 MSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETR----FTDTRKDEQDRCITIKSTAISM 273
++++ HVDHGK+TL D+ K+ I + G T+ FT D+ + IT T M
Sbjct: 174 VTLMGHVDHGKTTLLDAF-RKSTIASTEHGGITQKIGAFT-VPFDKGSKFITFLDTPGHM 231
Query: 274 FFQLEEK 294
F+ K
Sbjct: 232 AFEAMRK 238
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 26.2 bits (55), Expect = 1.0
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 103 NMSVIAHVDHGKSTLTDSLVSKAGII 180
N+ I HVD GKSTL +++ G++
Sbjct: 240 NIVFIGHVDAGKSTLGGNILFLTGMV 265
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 25.4 bits (53), Expect = 1.8
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +1
Query: 85 SKRNIRNMSVIAHVDHGKSTLTDSL 159
S++ N+ I HV HGKST+ ++
Sbjct: 19 SRQATINIGTIGHVAHGKSTVVKAI 43
>SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 566
Score = 25.4 bits (53), Expect = 1.8
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +2
Query: 128 ITASQPSRTRWFPR-PVSLLVREPERPVSLTRVRTNK 235
+T S T + P P S + REP P+S R+R+++
Sbjct: 48 LTPEPSSNTFYAPSSPASAVRREPLSPMSFVRMRSHR 84
>SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 176
Score = 24.6 bits (51), Expect = 3.1
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = -3
Query: 122 WAITDMLRIFRLLVHHPTDLVYREIHHFRWFMI 24
++I L F LL+H P + +H F F I
Sbjct: 36 YSILCFLSFFALLLHLPCSIYSHTLHFFHHFTI 68
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 23.8 bits (49), Expect = 5.5
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +1
Query: 82 TSKRNIRNMSVIAHVDHGKSTLTDSLVSKAGII 180
++ + + ++ V HVD GKST+ ++ + G I
Sbjct: 172 SNPKPVVHLVVTGHVDSGKSTMLGRIMFELGEI 204
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 23.8 bits (49), Expect = 5.5
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +1
Query: 112 VIAHVDHGKSTLTDSLVSKAGIIAGARAGETR 207
++ HVD GK+ L D+L ++ + G G T+
Sbjct: 489 ILGHVDTGKTKLLDNL-RRSNVQEGEAGGITQ 519
>SPAC9.08c |||steroid reductase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 282
Score = 23.8 bits (49), Expect = 5.5
Identities = 8/18 (44%), Positives = 10/18 (55%)
Frame = -3
Query: 80 HHPTDLVYREIHHFRWFM 27
HHP ++ R I F W M
Sbjct: 149 HHPVSIIRRYIGMFLWLM 166
>SPBC1105.18c ||SPBC887.21c|peptide release
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 162
Score = 23.4 bits (48), Expect = 7.3
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Frame = +1
Query: 160 VSKAGIIAGARAGET----RFTDTRKDEQDRCITIK 255
++K I+A + T R DTR EQ+RCI K
Sbjct: 67 INKTSIVAQVKHIPTGIIVRSQDTRSREQNRCIARK 102
>SPBC19F5.03 |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 598
Score = 23.4 bits (48), Expect = 7.3
Identities = 8/27 (29%), Positives = 16/27 (59%)
Frame = -3
Query: 83 VHHPTDLVYREIHHFRWFMIFVLLNQL 3
+H+ ++E H RW + +LLN++
Sbjct: 322 IHYHYFDFHKECSHMRWDRVSLLLNEI 348
>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
alpha-glucosyltransferase Alg10|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 445
Score = 23.4 bits (48), Expect = 7.3
Identities = 7/20 (35%), Positives = 11/20 (55%)
Frame = -3
Query: 80 HHPTDLVYREIHHFRWFMIF 21
HH + +I++F WF F
Sbjct: 249 HHQASIHLSQINYFLWFFFF 268
>SPAC30C2.02 |mmd1||deoxyhypusine hydroxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 318
Score = 23.0 bits (47), Expect = 9.6
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -3
Query: 203 VSPALAPAMIPALETNESV 147
++PA PA+I LE E V
Sbjct: 237 IAPASVPALIKVLENTEEV 255
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,301,654
Number of Sequences: 5004
Number of extensions: 24410
Number of successful extensions: 81
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 73700136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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