Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1372
(301 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 138 7e-34
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 138 7e-34
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 71 2e-13
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 71 2e-13
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 49 5e-07
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 46 5e-06
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 39 6e-04
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 39 6e-04
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 39 6e-04
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 38 0.001
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 38 0.001
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 36 0.005
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 36 0.005
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 33 0.050
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 31 0.12
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 31 0.12
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 31 0.12
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 31 0.12
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 31 0.12
Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical p... 31 0.20
AL117193-12|CAB60305.1| 415|Caenorhabditis elegans Hypothetical... 30 0.27
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 28 1.1
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 27 1.9
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 27 1.9
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 27 1.9
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 27 1.9
Z78419-7|CAC42290.1| 1601|Caenorhabditis elegans Hypothetical pr... 27 3.3
AF159144-1|AAF80368.1| 1601|Caenorhabditis elegans RRF-1 protein. 27 3.3
Z81527-16|CAB04280.1| 915|Caenorhabditis elegans Hypothetical p... 26 4.4
Z81527-15|CAB04279.1| 927|Caenorhabditis elegans Hypothetical p... 26 4.4
Z81110-8|CAB03263.1| 915|Caenorhabditis elegans Hypothetical pr... 26 4.4
Z81110-7|CAB03262.1| 927|Caenorhabditis elegans Hypothetical pr... 26 4.4
U39996-6|AAA81092.1| 595|Caenorhabditis elegans Hypothetical pr... 26 4.4
U41104-4|AAK67239.1| 388|Caenorhabditis elegans Nuclear hormone... 26 5.8
AF083231-1|AAD03689.1| 388|Caenorhabditis elegans nuclear recep... 26 5.8
AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical ... 26 5.8
Z50027-1|CAA90331.1| 583|Caenorhabditis elegans Hypothetical pr... 25 7.6
Z49889-1|CAA90066.2| 591|Caenorhabditis elegans Hypothetical pr... 25 7.6
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 138 bits (334), Expect = 7e-34
Identities = 65/71 (91%), Positives = 71/71 (100%)
Frame = +1
Query: 88 KRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAI 267
KRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAG++AGETRFTDTRKDEQ+RCITIKSTAI
Sbjct: 16 KRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGSKAGETRFTDTRKDEQERCITIKSTAI 75
Query: 268 SMFFQLEEKDL 300
S+FF+LE+KDL
Sbjct: 76 SLFFELEKKDL 86
Score = 30.3 bits (65), Expect = 0.27
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +3
Query: 42 MVNFTVDEIRGMMDK 86
MVNFTVDEIR +MD+
Sbjct: 1 MVNFTVDEIRALMDR 15
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 138 bits (334), Expect = 7e-34
Identities = 65/71 (91%), Positives = 71/71 (100%)
Frame = +1
Query: 88 KRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAI 267
KRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAG++AGETRFTDTRKDEQ+RCITIKSTAI
Sbjct: 16 KRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGSKAGETRFTDTRKDEQERCITIKSTAI 75
Query: 268 SMFFQLEEKDL 300
S+FF+LE+KDL
Sbjct: 76 SLFFELEKKDL 86
Score = 30.3 bits (65), Expect = 0.27
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +3
Query: 42 MVNFTVDEIRGMMDK 86
MVNFTVDEIR +MD+
Sbjct: 1 MVNFTVDEIRALMDR 15
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 70.5 bits (165), Expect = 2e-13
Identities = 31/60 (51%), Positives = 46/60 (76%)
Frame = +1
Query: 94 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISM 273
+IRN+ ++AHVDHGK++ DSLVS +I+ AG+ R+ D+R+DEQ R IT+KS+ IS+
Sbjct: 19 HIRNVCLVAHVDHGKTSFADSLVSANAVISSRMAGKLRYMDSREDEQTRGITMKSSGISL 78
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical
protein K10C3.5a protein.
Length = 894
Score = 70.5 bits (165), Expect = 2e-13
Identities = 31/60 (51%), Positives = 46/60 (76%)
Frame = +1
Query: 94 NIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISM 273
+IRN+ ++AHVDHGK++ DSLVS +I+ AG+ R+ D+R+DEQ R IT+KS+ IS+
Sbjct: 19 HIRNVCLVAHVDHGKTSFADSLVSANAVISSRMAGKLRYMDSREDEQTRGITMKSSGISL 78
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 49.2 bits (112), Expect = 5e-07
Identities = 23/59 (38%), Positives = 36/59 (61%)
Frame = +1
Query: 97 IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTAISM 273
IRN ++AHVDHGKSTL D L+ G + G+ + D + E++R IT+K+ ++
Sbjct: 42 IRNFGIVAHVDHGKSTLADRLLEMCGAVP---PGQKQMLDKLQVERERGITVKAQTAAL 97
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 46.0 bits (104), Expect = 5e-06
Identities = 26/61 (42%), Positives = 39/61 (63%), Gaps = 2/61 (3%)
Frame = +1
Query: 97 IRNMSVIAHVDHGKSTLTDSLVSKAGII--AGARAGETRFTDTRKDEQDRCITIKSTAIS 270
+RN+ VIAHVD GK+T+T+ L+ AG I AG TD E++R IT++S A++
Sbjct: 25 LRNIGVIAHVDAGKTTVTERLLYLAGAIHVAGHVDKGNTVTDFLDIERERGITVQSAAVN 84
Query: 271 M 273
+
Sbjct: 85 L 85
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 39.1 bits (87), Expect = 6e-04
Identities = 19/52 (36%), Positives = 28/52 (53%)
Frame = +1
Query: 103 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKS 258
N+ I HVDHGK+TLT ++ GA+ + D +E+ R ITI +
Sbjct: 51 NVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINA 102
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 39.1 bits (87), Expect = 6e-04
Identities = 19/52 (36%), Positives = 28/52 (53%)
Frame = +1
Query: 103 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKS 258
N+ I HVDHGK+TLT ++ GA+ + D +E+ R ITI +
Sbjct: 52 NVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINA 103
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 39.1 bits (87), Expect = 6e-04
Identities = 19/52 (36%), Positives = 28/52 (53%)
Frame = +1
Query: 103 NMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKS 258
N+ I HVDHGK+TLT ++ GA+ + D +E+ R ITI +
Sbjct: 52 NVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINA 103
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 38.3 bits (85), Expect = 0.001
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = +1
Query: 97 IRNMSVIAHVDHGKSTLTDSLVSKA-GIIAGARAGETRFTDTRKDEQDRCITIKSTAISM 273
+RN+++ H+ HGK+T D L+ + A + RFTD E+ R +IKS +S+
Sbjct: 132 MRNVAIAGHLHHGKTTFLDCLMEQTHPEFYRAEDADARFTDILFIEKQRGCSIKSQPVSI 191
Query: 274 FFQ 282
Q
Sbjct: 192 VAQ 194
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 38.3 bits (85), Expect = 0.001
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = +1
Query: 97 IRNMSVIAHVDHGKSTLTDSLVSKA-GIIAGARAGETRFTDTRKDEQDRCITIKSTAISM 273
+RN+++ H+ HGK+T D L+ + A + RFTD E+ R +IKS +S+
Sbjct: 7 MRNVAIAGHLHHGKTTFLDCLMEQTHPEFYRAEDADARFTDILFIEKQRGCSIKSQPVSI 66
Query: 274 FFQ 282
Q
Sbjct: 67 VAQ 69
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 35.9 bits (79), Expect = 0.005
Identities = 21/57 (36%), Positives = 31/57 (54%)
Frame = +1
Query: 82 TSKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITI 252
T K N+ N+ I H+DHGK+TLT ++ A+ + D K+E+ R ITI
Sbjct: 41 TPKINV-NVGTIGHIDHGKTTLTSAITRVQAKKGFAKHIKFDEIDKGKEEKKRGITI 96
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 35.9 bits (79), Expect = 0.005
Identities = 21/57 (36%), Positives = 31/57 (54%)
Frame = +1
Query: 82 TSKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITI 252
T K N+ N+ I H+DHGK+TLT ++ A+ + D K+E+ R ITI
Sbjct: 41 TPKINV-NVGTIGHIDHGKTTLTSAITRVQAKKGFAKHIKFDEIDKGKEEKKRGITI 96
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 32.7 bits (71), Expect = 0.050
Identities = 13/28 (46%), Positives = 21/28 (75%)
Frame = +1
Query: 97 IRNMSVIAHVDHGKSTLTDSLVSKAGII 180
IRN+ + AH+D GK+T+T+ ++ AG I
Sbjct: 44 IRNIGISAHIDSGKTTVTERILYYAGRI 71
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 31.5 bits (68), Expect = 0.12
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = +1
Query: 103 NMSVIAHVDHGKSTLTDSLVSKAG 174
N+ VI HVD GKST T L+ K G
Sbjct: 9 NIVVIGHVDSGKSTTTGHLIYKCG 32
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 31.5 bits (68), Expect = 0.12
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = +1
Query: 103 NMSVIAHVDHGKSTLTDSLVSKAG 174
N+ VI HVD GKST T L+ K G
Sbjct: 9 NIVVIGHVDSGKSTTTGHLIYKCG 32
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 31.5 bits (68), Expect = 0.12
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = +1
Query: 103 NMSVIAHVDHGKSTLTDSLVSKAG 174
N+ VI HVD GKST T L+ K G
Sbjct: 9 NIVVIGHVDSGKSTTTGHLIYKCG 32
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 31.5 bits (68), Expect = 0.12
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = +1
Query: 103 NMSVIAHVDHGKSTLTDSLVSKAG 174
N+ VI HVD GKST T L+ K G
Sbjct: 9 NIVVIGHVDSGKSTTTGHLIYKCG 32
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 31.5 bits (68), Expect = 0.12
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = +1
Query: 103 NMSVIAHVDHGKSTLTDSLVSKAG 174
N+ VI HVD GKST T L+ K G
Sbjct: 9 NIVVIGHVDSGKSTTTGHLIYKCG 32
>Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical
protein F46B6.6a protein.
Length = 702
Score = 30.7 bits (66), Expect = 0.20
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +1
Query: 106 MSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETR 207
++++ HVDHGK+TL D++ + I AG G T+
Sbjct: 159 VTIMGHVDHGKTTLLDAM-RNSQIAAGEFGGITQ 191
>AL117193-12|CAB60305.1| 415|Caenorhabditis elegans Hypothetical
protein Y105C5A.23 protein.
Length = 415
Score = 30.3 bits (65), Expect = 0.27
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = +2
Query: 134 ASQPSRTRWFPRPVSLLVREPERPVSLTRVRTNKTVASPLNLRPSLCSS 280
AS+ + + F R V+ ++EPE+P++ R+ + PL RPS+ S
Sbjct: 271 ASEWNPLKTFSRHVN--IKEPEKPMTTPRIVVSDETEVPLTQRPSISPS 317
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 28.3 bits (60), Expect = 1.1
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +1
Query: 82 TSKRNIRNMSVIAHVDHGKSTLTDSLVSKAGII 180
T K +I NM + HVD GKST+ L+ G++
Sbjct: 105 THKEHI-NMVFVGHVDAGKSTIGGQLMFLTGMV 136
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 27.5 bits (58), Expect = 1.9
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +1
Query: 103 NMSVIAHVDHGKSTLTDSLVSKAGIIA-GARAGETRFTDTRKDEQD 237
N+ ++ HVD GK+TLT + A A A T R++ D
Sbjct: 15 NLGILGHVDSGKTTLTRRIAELGSTSAFDAHATSTTTDGIRRNTLD 60
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 27.5 bits (58), Expect = 1.9
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +1
Query: 103 NMSVIAHVDHGKSTLTDSLVSKAGIIA-GARAGETRFTDTRKDEQD 237
N+ ++ HVD GK+TLT + A A A T R++ D
Sbjct: 15 NLGILGHVDSGKTTLTRRIAELGSTSAFDAHATSTTTDGIRRNTLD 60
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 27.5 bits (58), Expect = 1.9
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 91 RNIRNMSVIAHVDHGKSTLTDSLVSKAGII 180
+++ N+ V+ HVD GKSTL L+ ++
Sbjct: 168 KDLINLIVVGHVDAGKSTLMGHLLHDLEVV 197
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 27.5 bits (58), Expect = 1.9
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 91 RNIRNMSVIAHVDHGKSTLTDSLVSKAGII 180
+++ N+ V+ HVD GKSTL L+ ++
Sbjct: 186 KDLINLIVVGHVDAGKSTLMGHLLHDLEVV 215
>Z78419-7|CAC42290.1| 1601|Caenorhabditis elegans Hypothetical protein
F26A3.8 protein.
Length = 1601
Score = 26.6 bits (56), Expect = 3.3
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = +2
Query: 143 PSRTRWFPRPVSLLVREPERPVSLTRVRTNKTVASPLNLRPSLC 274
P T+W PV+ V PE P + SP+ + P LC
Sbjct: 1046 PLETKWRADPVTFEVIPPENPERIPDFHMGNE-RSPMYVSPRLC 1088
>AF159144-1|AAF80368.1| 1601|Caenorhabditis elegans RRF-1 protein.
Length = 1601
Score = 26.6 bits (56), Expect = 3.3
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = +2
Query: 143 PSRTRWFPRPVSLLVREPERPVSLTRVRTNKTVASPLNLRPSLC 274
P T+W PV+ V PE P + SP+ + P LC
Sbjct: 1046 PLETKWRADPVTFEVIPPENPERIPDFHMGNE-RSPMYVSPRLC 1088
>Z81527-16|CAB04280.1| 915|Caenorhabditis elegans Hypothetical
protein T01D3.6b protein.
Length = 915
Score = 26.2 bits (55), Expect = 4.4
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 218 RVRTNKTVASPLNLRPSLCSSS 283
R + N +A PLN PS C+SS
Sbjct: 480 RAQINCPLACPLNAHPSTCTSS 501
>Z81527-15|CAB04279.1| 927|Caenorhabditis elegans Hypothetical
protein T01D3.6a protein.
Length = 927
Score = 26.2 bits (55), Expect = 4.4
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 218 RVRTNKTVASPLNLRPSLCSSS 283
R + N +A PLN PS C+SS
Sbjct: 492 RAQINCPLACPLNAHPSTCTSS 513
>Z81110-8|CAB03263.1| 915|Caenorhabditis elegans Hypothetical
protein T01D3.6b protein.
Length = 915
Score = 26.2 bits (55), Expect = 4.4
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 218 RVRTNKTVASPLNLRPSLCSSS 283
R + N +A PLN PS C+SS
Sbjct: 480 RAQINCPLACPLNAHPSTCTSS 501
>Z81110-7|CAB03262.1| 927|Caenorhabditis elegans Hypothetical
protein T01D3.6a protein.
Length = 927
Score = 26.2 bits (55), Expect = 4.4
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 218 RVRTNKTVASPLNLRPSLCSSS 283
R + N +A PLN PS C+SS
Sbjct: 492 RAQINCPLACPLNAHPSTCTSS 513
>U39996-6|AAA81092.1| 595|Caenorhabditis elegans Hypothetical
protein C56E6.5 protein.
Length = 595
Score = 26.2 bits (55), Expect = 4.4
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +1
Query: 109 SVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRK 225
+++ D GK+TL ++L S AG G A +F TR+
Sbjct: 51 AIVGVADSGKTTLLEALTSGAGGDIGGIAMLDKFMLTRR 89
>U41104-4|AAK67239.1| 388|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 16 protein.
Length = 388
Score = 25.8 bits (54), Expect = 5.8
Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = -3
Query: 299 KSFSSSWKN-IEMAVDLMVMQRSCSSLRVSVKRVSPALAPAMIPALETNESVRVDLP 132
K++S N ++ +++ M R+C ++ ++PA +P +T V +DLP
Sbjct: 46 KTYSCQGNNDCDVTINIRCMCRACRYIKCIEVGMNPAGVQQRLPPSKTLVEVSMDLP 102
>AF083231-1|AAD03689.1| 388|Caenorhabditis elegans nuclear receptor
NHR-16 protein.
Length = 388
Score = 25.8 bits (54), Expect = 5.8
Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = -3
Query: 299 KSFSSSWKN-IEMAVDLMVMQRSCSSLRVSVKRVSPALAPAMIPALETNESVRVDLP 132
K++S N ++ +++ M R+C ++ ++PA +P +T V +DLP
Sbjct: 46 KTYSCQGNNDCDVTINIRCMCRACRYIKCIEVGMNPAGVQQRLPPSKTLVEVSMDLP 102
>AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical
protein Y39G10AR.8 protein.
Length = 469
Score = 25.8 bits (54), Expect = 5.8
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 85 SKRNIRNMSVIAHVDHGKSTL 147
S++ N+ I HV HGKSTL
Sbjct: 36 SRQATINIGTIGHVAHGKSTL 56
>Z50027-1|CAA90331.1| 583|Caenorhabditis elegans Hypothetical
protein C39B10.1 protein.
Length = 583
Score = 25.4 bits (53), Expect = 7.6
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -3
Query: 110 DMLRIFRLLVHHPTDLVYR 54
D +RI+R LVH DL++R
Sbjct: 218 DKIRIYRFLVHFFPDLLFR 236
>Z49889-1|CAA90066.2| 591|Caenorhabditis elegans Hypothetical
protein T06H11.1a protein.
Length = 591
Score = 25.4 bits (53), Expect = 7.6
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +1
Query: 124 VDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQD 237
+DH + + ++ + A G T TDT KD+QD
Sbjct: 125 IDHVTARWEGANINSQSALLDADDGATVITDTIKDDQD 162
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,245,671
Number of Sequences: 27780
Number of extensions: 141117
Number of successful extensions: 467
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 465
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 313072342
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -