Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1372
         (301 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    31   0.002
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    31   0.002
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    29   0.009
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    26   0.12 
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   1.4  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    22   1.9  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   1.9  
M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee preprosec...    20   7.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              20   7.6  
AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.      20   7.6  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    20   7.6  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 31.5 bits (68), Expect = 0.002
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = +1

Query: 103 NMSVIAHVDHGKSTLTDSLVSKAG 174
           N+ VI HVD GKST T  L+ K G
Sbjct: 9   NIVVIGHVDSGKSTTTGHLIYKCG 32


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 31.5 bits (68), Expect = 0.002
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = +1

Query: 103 NMSVIAHVDHGKSTLTDSLVSKAG 174
           N+ VI HVD GKST T  L+ K G
Sbjct: 9   NIVVIGHVDSGKSTTTGHLIYKCG 32


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 29.5 bits (63), Expect = 0.009
 Identities = 10/18 (55%), Positives = 16/18 (88%)
 Frame = +1

Query: 106 MSVIAHVDHGKSTLTDSL 159
           ++++ HVDHGK+TL D+L
Sbjct: 148 VTIMGHVDHGKTTLLDAL 165


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 25.8 bits (54), Expect = 0.12
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 85  SKRNIRNMSVIAHVDHGKSTLTDSL 159
           S++   N+  I HV HGKST+  ++
Sbjct: 38  SRQATINIGTIGHVAHGKSTIVKAI 62


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.2 bits (45), Expect = 1.4
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -3

Query: 83  VHHPTDLVYREIHH 42
           +HHP   + R++HH
Sbjct: 400 LHHPNCKINRKVHH 413


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.8 bits (44), Expect = 1.9
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -3

Query: 122 WAITDMLRIFRLLVHHPTDLVYR 54
           W I+D + +F L   + TD+ +R
Sbjct: 376 WIISDRMPVFLLXTLNYTDVXFR 398


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.8 bits (44), Expect = 1.9
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = +1

Query: 241 CITIKSTAISMFFQ 282
           C T+K +A+ M+F+
Sbjct: 688 CATVKGSAVDMYFR 701


>M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee
           preprosecapin mRNA, complete cds. ).
          Length = 77

 Score = 19.8 bits (39), Expect = 7.6
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = -2

Query: 123 VGDHRHVADIPLTCP 79
           V + R++ D+P  CP
Sbjct: 48  VPEPRYIIDVPPRCP 62


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 19.8 bits (39), Expect = 7.6
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -2

Query: 102 ADIPLTCPS 76
           AD+PL CP+
Sbjct: 228 ADLPLLCPA 236


>AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.
          Length = 77

 Score = 19.8 bits (39), Expect = 7.6
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = -2

Query: 123 VGDHRHVADIPLTCP 79
           V + R++ D+P  CP
Sbjct: 48  VPEPRYIIDVPPRCP 62


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 19.8 bits (39), Expect = 7.6
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 211 TDTRKDEQDRCITIKSTAIS 270
           +D RK    RC ++ STA S
Sbjct: 205 SDRRKGSIARCWSLDSTAAS 224


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,434
Number of Sequences: 438
Number of extensions: 1932
Number of successful extensions: 12
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6244050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)