Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1370
         (471 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    27   1.9  
SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces pombe...    26   2.5  
SPBPB21E7.09 ||SPAPB21E7.09, SPAPB21E7.09|L-asparaginase |Schizo...    25   5.8  
SPAC186.03 |||L-asparaginase|Schizosaccharomyces pombe|chr 1|||M...    25   5.8  
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    25   7.7  

>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +3

Query: 66   VAVASAGDYSNFAYSVADPYTGDFKN 143
            V +  A D  N++ ++ +PYT DF++
Sbjct: 2844 VTILDASDPGNYSNNIENPYTKDFED 2869


>SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 520

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 150 ESRLGDNVKGQYSLLESDGTRRTVDYAAGAE 242
           +S +GD++ G YS+LE+ G     D     E
Sbjct: 399 DSMVGDSIHGLYSILETSGAEIVGDIKRAQE 429


>SPBPB21E7.09 ||SPAPB21E7.09, SPAPB21E7.09|L-asparaginase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 360

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 198 SDGTRRTVDYAAGAEGFNAVVRKDPAL 278
           +  +  TVDYAAG+ G   +V   PA+
Sbjct: 54  ASSSTETVDYAAGSVGIATLVDAVPAI 80


>SPAC186.03 |||L-asparaginase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 360

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 198 SDGTRRTVDYAAGAEGFNAVVRKDPAL 278
           +  +  TVDYAAG+ G   +V   PA+
Sbjct: 54  ASSSTETVDYAAGSVGIATLVDAVPAI 80


>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -3

Query: 247 NPSAPAA*-STVLRVPSDSSSEY*PFTLSPSRLSTWFLKSPV 125
           NPS P A  S + R+PSDSS  +     SP+  +++   SP+
Sbjct: 98  NPSNPHADVSKIDRLPSDSSESHVATPSSPTISNSFVSVSPL 139


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,543,236
Number of Sequences: 5004
Number of extensions: 25416
Number of successful extensions: 76
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)