Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1370
(471 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1104 + 26121288-26122200,26122324-26122506,26122841-26124009 29 1.9
07_01_0635 + 4753919-4754090,4754200-4754258,4754377-4754432,475... 29 1.9
10_08_0933 + 21661209-21662813 29 2.5
09_02_0060 + 3729613-3729863,3730377-3730392 29 2.5
07_03_0759 - 21299502-21299807,21299889-21300039,21300151-213003... 29 2.5
06_03_0129 - 16993968-16994158,16994354-16994540,16997204-169975... 28 3.3
03_04_0167 + 17936598-17936763,17938735-17938831,17938919-179390... 28 3.3
11_03_0168 - 11099991-11100163,11100242-11100334,11101241-11101442 28 4.4
08_02_0034 - 11435678-11435702,11435787-11435816,11436364-114365... 27 5.8
06_01_0039 - 386576-387098,387173-387468,387744-388067,388165-38... 27 5.8
04_04_0617 - 26642602-26642637,26643307-26643565,26644610-266447... 27 5.8
03_02_0239 + 6705279-6705532,6705701-6706025,6706129-6706281,670... 27 5.8
01_01_1210 + 9749166-9749358,9750783-9751110,9752171-9752375 27 5.8
11_01_0242 - 1862106-1862210,1862302-1862320,1863082-1863257,186... 27 7.6
09_06_0080 + 20736778-20737005,20737104-20737482,20737572-207376... 27 7.6
09_02_0121 + 4502628-4502696,4503727-4503829,4504205-4504328,450... 27 7.6
01_06_1614 - 38648495-38649706 27 7.6
>12_02_1104 + 26121288-26122200,26122324-26122506,26122841-26124009
Length = 754
Score = 29.1 bits (62), Expect = 1.9
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 4/29 (13%)
Frame = -1
Query: 453 EPSKYLFTSSNAFCF----SKGFLCSCKE 379
EPS Y S+N++C S G+LC+C +
Sbjct: 263 EPSSYACVSANSYCTAVINSPGYLCNCSQ 291
>07_01_0635 +
4753919-4754090,4754200-4754258,4754377-4754432,
4754698-4754842,4755506-4755580,4755844-4755933,
4756218-4756295,4757879-4758376,4758512-4758997
Length = 552
Score = 29.1 bits (62), Expect = 1.9
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Frame = -2
Query: 410 SVKDSFVVVRKVAVVWESTEFSIVRESIGCGVGVRGADERSSGEQGGVLP--DHSVEPFG 237
+VK S V V VA W+ F R+ +G G G + + E+G VL D VE
Sbjct: 137 AVKGSRVAVHYVAK-WKGITFMTSRQGLGVGGGTPYGFDIGNSERGNVLKGLDLGVEGMK 195
Query: 236 SGG 228
GG
Sbjct: 196 VGG 198
>10_08_0933 + 21661209-21662813
Length = 534
Score = 28.7 bits (61), Expect = 2.5
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Frame = -2
Query: 443 NIYLQAQTRSVSVKDSFV-VVRKVAVVWESTEFSI--VRESIGCGVGVRGADERSS 285
++Y A S+ D+ V VR++ V+E E SI V S+G + V ADE S+
Sbjct: 305 SLYKTAGDHVPSLSDAIVDEVRRLVEVFEGEELSITVVGHSLGASLAVLAADELSA 360
>09_02_0060 + 3729613-3729863,3730377-3730392
Length = 88
Score = 28.7 bits (61), Expect = 2.5
Identities = 15/28 (53%), Positives = 17/28 (60%)
Frame = -3
Query: 85 PALATATRARMMKNLATILSRCSVVTLS 2
P+L A NLAT L+RCSVV LS
Sbjct: 54 PSLLCRVAAVCRLNLATALARCSVVELS 81
>07_03_0759 -
21299502-21299807,21299889-21300039,21300151-21300388,
21300729-21300939,21301018-21301133,21301388-21301519,
21302179-21303073
Length = 682
Score = 28.7 bits (61), Expect = 2.5
Identities = 19/75 (25%), Positives = 31/75 (41%)
Frame = +3
Query: 21 HLDKMVAKFFIILALVAVASAGDYSNFAYSVADPYTGDFKNQVESRLGDNVKGQYSLLES 200
HL + A F + + L +AG+ + + DPY+ + S NV + L
Sbjct: 9 HLAGVAAAFLLAVLLHVHLAAGEDEPPPWYLCDPYSASGRYSENSTFQANVNRLSATLPR 68
Query: 201 DGTRRTVDYAAGAEG 245
+ + YA GA G
Sbjct: 69 NTSSSPAMYATGAAG 83
>06_03_0129 -
16993968-16994158,16994354-16994540,16997204-16997517,
16997600-16997828
Length = 306
Score = 28.3 bits (60), Expect = 3.3
Identities = 14/24 (58%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Frame = -2
Query: 107 VCEVGVITGAGD-GHKGEDDEELG 39
VCEVGV G G+ G GED+ +LG
Sbjct: 210 VCEVGVNEGLGEHGGGGEDEIDLG 233
>03_04_0167 +
17936598-17936763,17938735-17938831,17938919-17939027,
17939125-17939163,17939655-17939768,17939886-17939947,
17940691-17940793,17942111-17942260,17942693-17942761,
17942840-17942896,17942966-17943226,17946154-17946222,
17946374-17946475,17947200-17947270,17947375-17947578,
17947848-17947941,17948350-17948646
Length = 687
Score = 28.3 bits (60), Expect = 3.3
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = -2
Query: 221 DRPASTVRLQQRVLTLHVISQSALHLVLEVARVRIRDAVCEVGV 90
D+ S LQ ++ L +QS+L ++ + VR RD+ C V +
Sbjct: 206 DQKRSNDALQMELMRLKEQTQSSLKVIQKFYDVRCRDSECSVNI 249
>11_03_0168 - 11099991-11100163,11100242-11100334,11101241-11101442
Length = 155
Score = 27.9 bits (59), Expect = 4.4
Identities = 14/27 (51%), Positives = 15/27 (55%)
Frame = -2
Query: 341 VRESIGCGVGVRGADERSSGEQGGVLP 261
+R S GCG V GA ER E G LP
Sbjct: 89 LRASAGCGTAVAGA-ERGEDEWAGCLP 114
>08_02_0034 -
11435678-11435702,11435787-11435816,11436364-11436501,
11436646-11436755,11436838-11436867,11437948-11437993,
11438453-11438622,11439156-11439221,11439299-11439378,
11440704-11440842,11440933-11441013,11441112-11441147,
11441414-11441539,11442084-11442179,11443615-11443689,
11444288-11444434,11445155-11445229,11445485-11445619,
11445706-11445834,11446161-11446292,11446395-11446598
Length = 689
Score = 27.5 bits (58), Expect = 5.8
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -2
Query: 326 GCGVGVRGADERSSGEQGG 270
GCGVGVRG R G+ G
Sbjct: 508 GCGVGVRGWGSRGGGKVNG 526
>06_01_0039 -
386576-387098,387173-387468,387744-388067,388165-388276,
388355-388482,388914-389048,389122-389250,389620-389787,
389897-390019,390099-390227,390543-390866,390946-392901
Length = 1448
Score = 27.5 bits (58), Expect = 5.8
Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 6/40 (15%)
Frame = +3
Query: 69 AVASAGDYSNFAYSVA---DPYTGDFKNQVESR---LGDN 170
A ASAG Y+ ++VA D YTGD+ +Q + + LGDN
Sbjct: 346 AAASAG-YAGTGHNVAQTSDSYTGDYSHQGQQQHGSLGDN 384
>04_04_0617 -
26642602-26642637,26643307-26643565,26644610-26644796,
26644981-26645044
Length = 181
Score = 27.5 bits (58), Expect = 5.8
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +3
Query: 240 EGFNAVVRKDPALLAAAPLICT 305
+GF++ V +DP L AA P ICT
Sbjct: 78 QGFSSRVYEDPQLNAATPGICT 99
>03_02_0239 +
6705279-6705532,6705701-6706025,6706129-6706281,
6709095-6709346,6709495-6709587,6710380-6710458,
6710556-6710662,6711550-6711795
Length = 502
Score = 27.5 bits (58), Expect = 5.8
Identities = 12/43 (27%), Positives = 21/43 (48%)
Frame = -2
Query: 293 RSSGEQGGVLPDHSVEPFGSGGVVDRPASTVRLQQRVLTLHVI 165
+SSG GG+ S P+G G + + +L+ V H++
Sbjct: 421 KSSGSSGGLAQSSSFMPYGGGTRLCAGSELAKLEMAVFLHHLV 463
>01_01_1210 + 9749166-9749358,9750783-9751110,9752171-9752375
Length = 241
Score = 27.5 bits (58), Expect = 5.8
Identities = 17/58 (29%), Positives = 25/58 (43%)
Frame = -2
Query: 206 TVRLQQRVLTLHVISQSALHLVLEVARVRIRDAVCEVGVITGAGDGHKGEDDEELGNH 33
TV L+ + SQ H V ++ + +C VGV+T H G D+ L H
Sbjct: 177 TVMTSLVALSFYGASQIKFHWVERYDKILVGSVLCLVGVLTYVFHHHDG-DEHSLHEH 233
>11_01_0242 -
1862106-1862210,1862302-1862320,1863082-1863257,
1863359-1863405,1864443-1865022
Length = 308
Score = 27.1 bits (57), Expect = 7.6
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = -2
Query: 284 GEQGGVLPDHSVEPFGSGGVVDRPASTVRLQ 192
G GG S +P+GSGG P ST R Q
Sbjct: 57 GGGGGYGAPPSTQPYGSGGGYGAPPSTQRPQ 87
>09_06_0080 +
20736778-20737005,20737104-20737482,20737572-20737615,
20738491-20738612,20738701-20738809,20738933-20739046
Length = 331
Score = 27.1 bits (57), Expect = 7.6
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -3
Query: 292 GAAASKAGSFLTTALNPSAPAA*STVLRVPSDSSSE 185
GAA K G+ + A NP+ PAA V +D+ +
Sbjct: 9 GAAGDKPGADASPATNPAPPAAAVAVAAAAADAGGD 44
>09_02_0121 +
4502628-4502696,4503727-4503829,4504205-4504328,
4505963-4506306,4506383-4506487,4507907-4508288,
4509173-4509437,4509936-4510094,4511150-4511201,
4511266-4511462,4512865-4513350,4513797-4514093
Length = 860
Score = 27.1 bits (57), Expect = 7.6
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -2
Query: 347 SIVRESIGCGVGVRGADERSSGEQGGVLPDH 255
SI +E GV R +D R S +Q ++PDH
Sbjct: 290 SIHKEDTTSGVETRPSDMRLSDKQHVIIPDH 320
>01_06_1614 - 38648495-38649706
Length = 403
Score = 27.1 bits (57), Expect = 7.6
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = -2
Query: 290 SSGEQGGVLPDHSVEPFGSGGVVDRPASTVRLQQRVLTLHVISQSALH 147
SSG +G + DH G+ D P + V V + S+ A+H
Sbjct: 74 SSGSEGTISDDHGDGIAGAAAAADAPVARVAFPCHVCSKEFGSRKAVH 121
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,927,407
Number of Sequences: 37544
Number of extensions: 206753
Number of successful extensions: 775
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 955200320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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