Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1370
         (471 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB209582-1|BAD92819.1|  272|Homo sapiens regulator of G-protein ...    33   0.66 
AJ288083-1|CAB93851.1|  355|Homo sapiens galectin-9 protein.           30   3.5  

>AB209582-1|BAD92819.1|  272|Homo sapiens regulator of G-protein
           signalling 11 isoform 1 variant protein.
          Length = 272

 Score = 32.7 bits (71), Expect = 0.66
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = -2

Query: 305 GADERSSGEQGGVLPDHSVEPFGSGGVVDRPASTVRLQQ 189
           G DE + GE+GG  P+      G GGV  R  ++ R QQ
Sbjct: 189 GGDEGAGGEEGGSSPEQYQGLLGIGGVTSRVTASDRPQQ 227


>AJ288083-1|CAB93851.1|  355|Homo sapiens galectin-9 protein.
          Length = 355

 Score = 30.3 bits (65), Expect = 3.5
 Identities = 18/65 (27%), Positives = 30/65 (46%)
 Frame = +3

Query: 108 SVADPYTGDFKNQVESRLGDNVKGQYSLLESDGTRRTVDYAAGAEGFNAVVRKDPALLAA 287
           S A P++G  +  ++  L   V G  ++L S GTR  VD+  G  G +     +P     
Sbjct: 12  SPAVPFSGTIQGGLQDGLQITVNG--TVLSSSGTRFAVDFQTGFSGNDIAFHFNPRFEDG 69

Query: 288 APLIC 302
             ++C
Sbjct: 70  GYVVC 74


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 55,045,810
Number of Sequences: 237096
Number of extensions: 969573
Number of successful extensions: 2907
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2907
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4099895856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)