Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1368
         (690 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces...    28   1.5  
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    27   1.9  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   1.9  
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    27   1.9  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   1.9  
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce...    27   2.6  
SPBC1271.06c |mug96||sequence orphan|Schizosaccharomyces pombe|c...    27   3.4  
SPAC23C4.05c |||LEA domain protein|Schizosaccharomyces pombe|chr...    26   4.5  
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    26   5.9  
SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr...    25   7.8  
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc...    25   7.8  

>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 967

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +1

Query: 217 DNPPPPVEEPGQAMDKPPEPKPNLIDKLVIIFAETKTHSPRFTLP 351
           D  PPP ++  +   KP E    ++D    +FAE K    + T P
Sbjct: 855 DGEPPPSDKSSKEKVKPREIDIRIVDFANCVFAEDKELLAKATCP 899


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = +1

Query: 196 MAEKTDQDNPPPPVE-EPGQAMDKPP 270
           M  K  +  PPPP+  EPG+ M  PP
Sbjct: 212 MHHKPGEHMPPPPMHHEPGEHMPPPP 237



 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = +1

Query: 196 MAEKTDQDNPPPPVE-EPGQAMDKPP 270
           M  +  +  PPPP+  EPG+ M  PP
Sbjct: 225 MHHEPGEHMPPPPMHHEPGEHMPPPP 250



 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = +1

Query: 196 MAEKTDQDNPPPPVE-EPGQAMDKPP 270
           M  +  +  PPPP+  EPG+ M  PP
Sbjct: 238 MHHEPGEHMPPPPMHHEPGEHMPPPP 263



 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = +1

Query: 196 MAEKTDQDNPPPPVE-EPGQAMDKPP 270
           M  +  +  PPPP+  EPG+ M  PP
Sbjct: 251 MHHEPGEHMPPPPMHHEPGEHMPPPP 276



 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = +1

Query: 196 MAEKTDQDNPPPPVE-EPGQAMDKPP 270
           M  +  +  PPPP+  EPG+ M  PP
Sbjct: 264 MHHEPGEHMPPPPMHHEPGEHMPPPP 289



 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = +1

Query: 196 MAEKTDQDNPPPPVE-EPGQAMDKPP 270
           M  +  +  PPPP+  EPG+ M  PP
Sbjct: 277 MHHEPGEHMPPPPMHHEPGEHMPPPP 302



 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = +1

Query: 196 MAEKTDQDNPPPPVE-EPGQAMDKPP 270
           M  +  +  PPPP+  EPG+ M  PP
Sbjct: 290 MHHEPGEHMPPPPMHHEPGEHMPPPP 315



 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = +1

Query: 196 MAEKTDQDNPPPPVE-EPGQAMDKPP 270
           M  +  +  PPPP+  EPG+ M  PP
Sbjct: 303 MHHEPGEHMPPPPMHHEPGEHMPPPP 328



 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = +1

Query: 196 MAEKTDQDNPPPPVE-EPGQAMDKPP 270
           M  +  +  PPPP+  EPG+ M  PP
Sbjct: 316 MHHEPGEHMPPPPMHHEPGEHMPPPP 341


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
 Frame = +1

Query: 220 NPPPPVEEPG-QAMDKPPEPKP 282
           NPPPP   PG +   +PP P P
Sbjct: 8   NPPPPPPPPGFEPPSQPPPPPP 29


>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1242

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = +1

Query: 370  PNELYRRLLPAMLFVLTFVTVMTMLLIYM 456
            P+  Y+RL+  +LF     T++T+LL+++
Sbjct: 954  PSNFYKRLIALLLFCWICSTLVTVLLVFV 982


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +1

Query: 223 PPPPVEEPGQAMDKPPEPKP 282
           PPPP   PG A   PP P P
Sbjct: 761 PPPPPPPPGVAGAGPPPPPP 780


>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 226 PPPVEEPGQAMDKPPEPKPNLIDKLVII 309
           P P E+P +  +KPP+ K + ++K   I
Sbjct: 493 PVPKEKPSEKSEKPPKKKGSKLEKFCCI 520


>SPBC1271.06c |mug96||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 146

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +3

Query: 645 LERNCTMAHLWSG 683
           L+ NCT+A LWSG
Sbjct: 126 LQHNCTLADLWSG 138


>SPAC23C4.05c |||LEA domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 431

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +1

Query: 229 PPVEEPGQAMDKPPEPKPNLIDKLVIIFAETKTHS 333
           PP+E P Q   KP +    + DK    + + K H+
Sbjct: 90  PPIETPSQFWRKPLQYVSKVTDKCKSFYEKEKNHA 124


>SPBC1826.01c |mot1||TATA-binding protein associated factor
            Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -1

Query: 678  STNVPLYNSSPKNGIQNLHLLCRCGNN 598
            +T  P+++ S KNGI +LH +    +N
Sbjct: 1054 TTETPIFHDSGKNGILSLHSIGTSDDN 1080


>SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 591

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +1

Query: 265 PPEPKPNLIDKLVIIFAETKTHSPRFTLPAFMKAPPNELYRR 390
           PP+    L+DKLV  F E++  +P F +       P   Y R
Sbjct: 440 PPQTCSRLLDKLVGEFIESECINPTFIIGHPQMMSPLAKYHR 481


>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 489

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +1

Query: 133 ISGLCPFFVFFLMQGIENKVIMAEKTDQDNPPP 231
           I  L P FVF     I+ +V+  ++   +N PP
Sbjct: 438 IQNLPPLFVFNARSVIDKEVVPEQEKSAENQPP 470


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,810,046
Number of Sequences: 5004
Number of extensions: 57885
Number of successful extensions: 185
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)