Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1367
         (666 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z54342-12|CAA91145.2|  758|Caenorhabditis elegans Hypothetical p...    30   1.7  
L15313-10|AAP68920.1|  355|Caenorhabditis elegans Hypothetical p...    29   3.9  
L15313-9|AAP68921.1|  357|Caenorhabditis elegans Hypothetical pr...    29   3.9  
AF067942-10|AAG45578.2|  358|Caenorhabditis elegans Hypothetical...    27   9.1  

>Z54342-12|CAA91145.2|  758|Caenorhabditis elegans Hypothetical
           protein C08H9.3a protein.
          Length = 758

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 15/53 (28%), Positives = 30/53 (56%)
 Frame = -2

Query: 512 LQNKRWQIITLSYNVIC*RLQLLKYKYLEGYI*YYVLNDFKAVESNMIMFGTP 354
           +  +R+ +  LSY+++     +  Y Y  GY+ YY++N F+    N+++  TP
Sbjct: 176 IDTERYLMAALSYSILLNFKHIYVY-YALGYVFYYLVNYFQ-FSGNVLLANTP 226


>L15313-10|AAP68920.1|  355|Caenorhabditis elegans Hypothetical
           protein ZK353.1a protein.
          Length = 355

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +2

Query: 398 HLKHNIKCILPSIYISEAVNVNK*HYNLM*LF 493
           HLK+ IKCI  +IY   +   N+ H  LM +F
Sbjct: 132 HLKNTIKCISLAIYYHISNRKNRGHERLMEIF 163


>L15313-9|AAP68921.1|  357|Caenorhabditis elegans Hypothetical
           protein ZK353.1b protein.
          Length = 357

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +2

Query: 398 HLKHNIKCILPSIYISEAVNVNK*HYNLM*LF 493
           HLK+ IKCI  +IY   +   N+ H  LM +F
Sbjct: 134 HLKNTIKCISLAIYYHISNRKNRGHERLMEIF 165


>AF067942-10|AAG45578.2|  358|Caenorhabditis elegans Hypothetical
           protein ZK6.1 protein.
          Length = 358

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 4   CLIVGLLIELTVMNEHHVALVI 69
           C +VG +IEL + NE H+ L +
Sbjct: 178 CRLVGRIIELKITNEEHLLLCV 199


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,078,067
Number of Sequences: 27780
Number of extensions: 270000
Number of successful extensions: 457
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 457
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)