Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1364
         (377 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    25   0.23 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   0.98 
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    25   3.0  
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar...    25   3.0  
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    25   3.9  
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb...    25   3.9  
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces...    24   6.9  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.0 bits (52), Expect(2) = 0.23
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = -2

Query: 109 GDIPVPTVQNSAPQPTDPENMEVTENSTP 23
           G IP+P    SAP P  P +   T    P
Sbjct: 349 GSIPLPPQGRSAPPPPPPRSAPSTGRQPP 377



 Score = 22.6 bits (46), Expect(2) = 0.23
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -2

Query: 280 SKKVQPTPAPRGRTSAGAPTISRPTS 203
           +KK  P P P  R + G P I   +S
Sbjct: 307 NKKRPPPPPPPSRRNRGKPPIGNGSS 332


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.1 bits (57), Expect = 0.98
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 5/36 (13%)
 Frame = -2

Query: 289  PRQSKKVQPTPAPRG-----RTSAGAPTISRPTSGI 197
            P+ S    P PAP G     + S  AP +  P+SGI
Sbjct: 1143 PKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGI 1178



 Score = 25.8 bits (54), Expect = 2.3
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -2

Query: 289  PRQSKKVQPTPAPRGRTSAGAPTISRP 209
            P+ S  V P PAP G      P+++ P
Sbjct: 1105 PKPSVAVPPVPAPSGAPPVPKPSVAAP 1131


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 25.4 bits (53), Expect = 3.0
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -2

Query: 304 AQANPPRQSKKVQPTPAPRGRTSAGAPTIS 215
           A A+  +  KKV P PAP   +    P+I+
Sbjct: 285 AWASVAKSKKKVTPAPAPAPESEPSKPSIA 314


>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 988

 Score = 25.4 bits (53), Expect = 3.0
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -2

Query: 100 PVPTVQNSAPQPTDPENMEVTENSTPAHTIPS 5
           PV +V N++P P  PE  + + N TP+ + P+
Sbjct: 594 PVTSVLNTSPLPKTPEK-DRSLNVTPSSSTPT 624


>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 271 VQPTPAPRGRTSAGAPTISRP 209
           ++P P P  R S G P+IS P
Sbjct: 117 LKPHPLPPKRVSLGIPSISNP 137


>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
           membrane proteins, ESCRT 0 complex|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 610

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 64  TDPENMEVTENSTPAHTI 11
           T P NM ++  S PAHT+
Sbjct: 331 TAPNNMNISYPSVPAHTV 348


>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 24.2 bits (50), Expect = 6.9
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -2

Query: 262 TPAPRGRTSAGAPTISRPTSGITTL 188
           +P P  R+++ +PT+S   SG+T L
Sbjct: 455 SPPPLSRSASISPTLSGSGSGLTPL 479


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,273,563
Number of Sequences: 5004
Number of extensions: 19173
Number of successful extensions: 89
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)