Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1364
         (377 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72504-5|CAA96602.2|  812|Caenorhabditis elegans Hypothetical pr...    30   0.48 
Z72504-4|CAH60755.1|  653|Caenorhabditis elegans Hypothetical pr...    30   0.48 
X91045-1|CAA62505.1|  693|Caenorhabditis elegans let-653 protein.      30   0.48 
Z47356-5|CAA87418.1|  173|Caenorhabditis elegans Hypothetical pr...    28   1.9  
AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    28   2.5  
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    28   2.5  
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    28   2.5  
Z50874-5|CAA90764.1|  305|Caenorhabditis elegans Hypothetical pr...    27   3.4  
Z92973-7|CAB07494.1| 1213|Caenorhabditis elegans Hypothetical pr...    27   4.5  
Z81481-10|CAB03951.1| 1213|Caenorhabditis elegans Hypothetical p...    27   4.5  
AF025460-2|AAF02169.3|  545|Caenorhabditis elegans Prion-like-(q...    27   4.5  
AL110477-13|CAB54337.2|  789|Caenorhabditis elegans Hypothetical...    27   5.9  
AF230279-1|AAG16654.1|  789|Caenorhabditis elegans SWI3-like pro...    27   5.9  
Z81548-4|CAB04465.1|  916|Caenorhabditis elegans Hypothetical pr...    26   7.8  
Z81503-5|CAB04114.1|  916|Caenorhabditis elegans Hypothetical pr...    26   7.8  
Z81057-3|CAB02916.1|  168|Caenorhabditis elegans Hypothetical pr...    26   7.8  
AL023835-10|CAA19494.2|  691|Caenorhabditis elegans Hypothetical...    26   7.8  

>Z72504-5|CAA96602.2|  812|Caenorhabditis elegans Hypothetical
           protein C29E6.1a protein.
          Length = 812

 Score = 30.3 bits (65), Expect = 0.48
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = -2

Query: 106 DIPVPTVQNSAPQPTDPENMEVTENSTPAHT 14
           D+P  TVQ S   PT P     T  +TP  T
Sbjct: 494 DVPTTTVQTSTTVPTTPSKTTATTTTTPKPT 524


>Z72504-4|CAH60755.1|  653|Caenorhabditis elegans Hypothetical
           protein C29E6.1b protein.
          Length = 653

 Score = 30.3 bits (65), Expect = 0.48
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = -2

Query: 106 DIPVPTVQNSAPQPTDPENMEVTENSTPAHT 14
           D+P  TVQ S   PT P     T  +TP  T
Sbjct: 335 DVPTTTVQTSTTVPTTPSKTTATTTTTPKPT 365


>X91045-1|CAA62505.1|  693|Caenorhabditis elegans let-653 protein.
          Length = 693

 Score = 30.3 bits (65), Expect = 0.48
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = -2

Query: 106 DIPVPTVQNSAPQPTDPENMEVTENSTPAHT 14
           D+P  TVQ S   PT P     T  +TP  T
Sbjct: 375 DVPTTTVQTSTTVPTTPSKTTATTTTTPKPT 405


>Z47356-5|CAA87418.1|  173|Caenorhabditis elegans Hypothetical
           protein T15H9.5 protein.
          Length = 173

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 97  VPTVQNSAPQPTDPENMEVTENSTPAHTIPS 5
           V  VQN+ P+P  P  M + E+ +    +PS
Sbjct: 23  VQNVQNTQPKPAAPSQMSIDESHSKNQKLPS 53


>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = -2

Query: 292 PPRQSKKVQPTPAPRGRTSAGAPTISRPTSG 200
           PPRQ ++      P G    G+P   RP  G
Sbjct: 332 PPRQKRQAPERSPPTGSPPTGSPPTGRPPRG 362


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = -2

Query: 292 PPRQSKKVQPTPAPRGRTSAGAPTISRPTSG 200
           PPRQ ++      P G    G+P   RP  G
Sbjct: 353 PPRQKRQAPERSPPTGSPPTGSPPTGRPPRG 383


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = -2

Query: 292 PPRQSKKVQPTPAPRGRTSAGAPTISRPTSG 200
           PPRQ ++      P G    G+P   RP  G
Sbjct: 338 PPRQKRQAPERSPPTGSPPTGSPPTGRPPRG 368


>Z50874-5|CAA90764.1|  305|Caenorhabditis elegans Hypothetical
           protein R10E4.3 protein.
          Length = 305

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -3

Query: 93  LQCRILHHNQPTQRTWRSQKTPLR 22
           L  RI+HHNQP+++T +   + +R
Sbjct: 203 LLSRIVHHNQPSRKTLKPATSTIR 226


>Z92973-7|CAB07494.1| 1213|Caenorhabditis elegans Hypothetical protein
            C38D9.5 protein.
          Length = 1213

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 14/22 (63%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
 Frame = -1

Query: 323  IGVYADGTGQ-PATAVKESPTY 261
            +GVY DGTG  PAT  KE P+Y
Sbjct: 1082 LGVY-DGTGDFPATNPKEGPSY 1102


>Z81481-10|CAB03951.1| 1213|Caenorhabditis elegans Hypothetical
            protein C38D9.5 protein.
          Length = 1213

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 14/22 (63%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
 Frame = -1

Query: 323  IGVYADGTGQ-PATAVKESPTY 261
            +GVY DGTG  PAT  KE P+Y
Sbjct: 1082 LGVY-DGTGDFPATNPKEGPSY 1102


>AF025460-2|AAF02169.3|  545|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 41
           protein.
          Length = 545

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 301 QANPPRQSKKVQPTPAPRGRTSAGAP 224
           +++PP   K   P+  PR  TSA AP
Sbjct: 69  KSSPPHHQKSAAPSAPPRDVTSAHAP 94


>AL110477-13|CAB54337.2|  789|Caenorhabditis elegans Hypothetical
           protein Y113G7B.23 protein.
          Length = 789

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 100 PVPTVQNSAPQPTDPENMEVTENSTPA 20
           P P VQ SA +   PE M+ +E +T A
Sbjct: 564 PTPQVQISAQEAAIPEKMDTSEAATAA 590


>AF230279-1|AAG16654.1|  789|Caenorhabditis elegans SWI3-like
           protein protein.
          Length = 789

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 100 PVPTVQNSAPQPTDPENMEVTENSTPA 20
           P P VQ SA +   PE M+ +E +T A
Sbjct: 564 PTPQVQISAQEAAIPEKMDTSEAATAA 590


>Z81548-4|CAB04465.1|  916|Caenorhabditis elegans Hypothetical
           protein F14F7.5 protein.
          Length = 916

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 13/42 (30%), Positives = 18/42 (42%)
 Frame = -2

Query: 313 TLMAQANPPRQSKKVQPTPAPRGRTSAGAPTISRPTSGITTL 188
           T ++   P  QS   QP P PRG +       S P +   +L
Sbjct: 784 TPLSSPAPSNQSPPSQPQPGPRGSSPPAPSAPSAPETDTNSL 825


>Z81503-5|CAB04114.1|  916|Caenorhabditis elegans Hypothetical
           protein F14F7.5 protein.
          Length = 916

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 13/42 (30%), Positives = 18/42 (42%)
 Frame = -2

Query: 313 TLMAQANPPRQSKKVQPTPAPRGRTSAGAPTISRPTSGITTL 188
           T ++   P  QS   QP P PRG +       S P +   +L
Sbjct: 784 TPLSSPAPSNQSPPSQPQPGPRGSSPPAPSAPSAPETDTNSL 825


>Z81057-3|CAB02916.1|  168|Caenorhabditis elegans Hypothetical
           protein F10D11.4 protein.
          Length = 168

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -2

Query: 97  VPTVQNSAPQPTDPENMEVTENSTPAHTIPS 5
           V  VQ + P+P  P  M + E+++    +PS
Sbjct: 26  VQNVQETPPKPAAPSQMSIDESNSKNKKLPS 56


>AL023835-10|CAA19494.2|  691|Caenorhabditis elegans Hypothetical
           protein Y37A1B.11 protein.
          Length = 691

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 11/27 (40%), Positives = 20/27 (74%)
 Frame = -2

Query: 286 RQSKKVQPTPAPRGRTSAGAPTISRPT 206
           ++ ++ Q TPAP G +++GA T S+P+
Sbjct: 612 KKFRQTQKTPAPSGASTSGAST-SKPS 637


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,435,948
Number of Sequences: 27780
Number of extensions: 126215
Number of successful extensions: 744
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 744
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 557037416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)