Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1362
(508 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 4.9
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom... 25 4.9
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|... 25 6.5
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo... 25 6.5
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos... 25 6.5
SPAC1486.01 |||manganese superoxide dismutase |Schizosaccharomyc... 25 8.6
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 25 8.6
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 25 8.6
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 25 8.6
SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom... 25 8.6
>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 262
Score = 25.4 bits (53), Expect = 4.9
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = +1
Query: 241 SYSQIGYGSNYAPPRRPLRPTHG 309
SYSQ Y PP+ P P+ G
Sbjct: 96 SYSQPSYSQPSQPPKEPALPSRG 118
>SPCC132.01c ||SPCC1322.17c|DUF814 family
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1021
Score = 25.4 bits (53), Expect = 4.9
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +2
Query: 44 DDIRELLRAKNASIRAYDRYPTAENRIRMRALQRDVKSRIAEVRDAR 184
D+ + A+ RA+DR TAE R+ + + D ++ ++DA+
Sbjct: 342 DEFFSSIEAQKLKKRAHDRLATAER--RLESAKEDQARKLQSLQDAQ 386
>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 736
Score = 25.0 bits (52), Expect = 6.5
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +2
Query: 23 LHRFKLSDDIRELLRAKNASIRAYDRYPTAENRIRMRALQRDVKSRIA 166
LH KLS I ++ + + YD YP A +AL+R V +++
Sbjct: 511 LH-LKLSKGIMDI-KVLTHQLMLYDLYPPAHQTYLWKALERLVNEKVS 556
>SPCC1739.11c |cdc11||SIN component scaffold protein
Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1045
Score = 25.0 bits (52), Expect = 6.5
Identities = 15/32 (46%), Positives = 16/32 (50%)
Frame = +2
Query: 23 LHRFKLSDDIRELLRAKNASIRAYDRYPTAEN 118
L+RF DIR L R N S R D P A N
Sbjct: 809 LNRFNRPPDIRRLKRLVNFSFRTQD--PEASN 838
>SPBC17D11.05 |tif32||translation initiation factor
eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 932
Score = 25.0 bits (52), Expect = 6.5
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +1
Query: 244 YSQIGYGSNYAPPRRPLRPTHG 309
YS+ GY PPR L P+ G
Sbjct: 898 YSRGGYSRGSVPPRETLAPSKG 919
>SPAC1486.01 |||manganese superoxide dismutase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 218
Score = 24.6 bits (51), Expect = 8.6
Identities = 11/50 (22%), Positives = 25/50 (50%)
Frame = +2
Query: 140 QRDVKSRIAEVRDARWSDFLEGLAPSQRSYYRLARTLKSDTVVTMPPLVG 289
Q+++ + +A ++ + W+ L + R+ T DT+V P++G
Sbjct: 134 QKEMNAALASIQGSGWA----WLIVDKDGSLRITTTANQDTIVKSKPIIG 179
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1778
Score = 24.6 bits (51), Expect = 8.6
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -2
Query: 486 SLTSIGVTGGNTSEGGKQAXRSTSLSTNSTCTGS 385
S S G+ GG+T K A +TN+T TG+
Sbjct: 316 STPSTGLFGGSTFNQQKPAFSGFGSTTNTTNTGT 349
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 24.6 bits (51), Expect = 8.6
Identities = 16/67 (23%), Positives = 27/67 (40%)
Frame = +2
Query: 272 MPPLVGPSGRLTAFDDDEKAELLADTLQTQCTPSTQSVDPVHVELVDSEVERXACLPPSD 451
+P SG + + + +ADT T C P+T + + S +C PP+
Sbjct: 140 LPDSTTTSGSQVSNAVEASSTFVADTTSTSCNPATVLI------VTTSGSTSTSCPPPTT 193
Query: 452 VLPPVTP 472
+L P
Sbjct: 194 ILIVTVP 200
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 24.6 bits (51), Expect = 8.6
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = +2
Query: 275 PPLVGPSGRLTAFDDDEKAELLADTLQTQCTPSTQ 379
PP V + +L ++ K + L D LQ P+T+
Sbjct: 1944 PPSVASNAKLPPASNNRKVDPLEDILQAMPPPTTR 1978
>SPBC1A4.07c |||U3 snoRNP-associated protein
Sof1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 436
Score = 24.6 bits (51), Expect = 8.6
Identities = 18/53 (33%), Positives = 23/53 (43%)
Frame = +2
Query: 17 DFLHRFKLSDDIRELLRAKNASIRAYDRYPTAENRIRMRALQRDVKSRIAEVR 175
D + F SDD L AS RA R ENR++ R+ I E+R
Sbjct: 327 DAQYIFSGSDDSNVRLWRARASSRASIRSTREENRLKYLDSLRERYKHIPEIR 379
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,033,706
Number of Sequences: 5004
Number of extensions: 39567
Number of successful extensions: 119
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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