Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1362
(508 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1486 + 26899479-26899549,26899861-26899989,26900649-269008... 31 0.53
04_04_0917 - 29404341-29404519,29404610-29404744,29404898-294052... 30 1.2
05_01_0313 - 2461487-2461861,2461929-2462513,2462819-2464154,246... 29 2.1
01_06_1154 - 34955235-34955827,34955912-34956045,34956142-349563... 29 2.1
02_04_0213 + 20974712-20975413 29 2.8
11_01_0448 - 3469398-3469676,3470015-3470284,3470386-3470476,347... 28 3.7
06_03_1488 + 30484904-30485134,30485239-30487159,30487255-304876... 28 5.0
07_01_0760 - 5844349-5844401,5844521-5844665,5844782-5845297,584... 27 6.5
04_04_0156 + 23160681-23160862,23161090-23161179,23163145-231634... 27 6.5
11_01_0020 + 140220-140312,141282-141665 27 8.7
06_01_0609 + 4404287-4405023,4405496-4405631,4405724-4405876,440... 27 8.7
03_05_0549 - 25444234-25446792 27 8.7
>07_03_1486 + 26899479-26899549,26899861-26899989,26900649-26900834,
26901025-26901247,26901662-26901666,26901796-26901924,
26902697-26902894,26903138-26903356,26903461-26903699,
26903797-26903888,26904009-26904224,26904327-26904554,
26904631-26904722,26904806-26904899,26905475-26905567,
26905667-26906640,26906727-26906841,26907135-26908895
Length = 1687
Score = 31.1 bits (67), Expect = 0.53
Identities = 17/55 (30%), Positives = 29/55 (52%)
Frame = +2
Query: 320 DEKAELLADTLQTQCTPSTQSVDPVHVELVDSEVERXACLPPSDVLPPVTPMEVK 484
DE A +L D S S+D + +E + +++ + LPP+ LPP P +V+
Sbjct: 1574 DEAAPILEDRGMAPSVSSRLSLDEI-IE-ISCDLDAVSALPPAKPLPPQPPTQVR 1626
>04_04_0917 -
29404341-29404519,29404610-29404744,29404898-29405225,
29405313-29405532,29405653-29406647,29407233-29407493,
29407534-29407872,29409309-29409497
Length = 881
Score = 29.9 bits (64), Expect = 1.2
Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +2
Query: 185 WSDFLEGLAPSQ--RSYYRLARTLKSDTVVTMPPLVGPSGRLTAFDDDEKAELL 340
WS+ L + S +S +RLAR L S + +P V PSG F EKA LL
Sbjct: 572 WSEQLVSVQTSTCIKSKFRLARLL-SFRLYNVPMDVSPSGICGPFKQPEKANLL 624
>05_01_0313 -
2461487-2461861,2461929-2462513,2462819-2464154,
2464231-2464338,2464421-2464743
Length = 908
Score = 29.1 bits (62), Expect = 2.1
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +3
Query: 18 TSFTASNCPTILGNSLELRTPRYAPTTGILPRKIVFECVPYN 143
T + AS C +G +LE +P T +LPR FE +P++
Sbjct: 341 TDYLASECA--IGINLERTSPPEETTYVLLPRAAYFEFIPFD 380
>01_06_1154 -
34955235-34955827,34955912-34956045,34956142-34956389,
34956431-34956901
Length = 481
Score = 29.1 bits (62), Expect = 2.1
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +2
Query: 122 IRMRALQRDVKSRIAEVRDARWSDFLEGLAPSQRSYYRLARTLK 253
+R++AL + +SR+A+ + + DF+ L P R Y R+ +K
Sbjct: 182 LRLKALNGE-RSRLAQSFEYNYGDFIPILRPFLRGYLRICEEVK 224
>02_04_0213 + 20974712-20975413
Length = 233
Score = 28.7 bits (61), Expect = 2.8
Identities = 26/90 (28%), Positives = 34/90 (37%), Gaps = 3/90 (3%)
Frame = +2
Query: 68 AKNASIRAYDRYPTAENRIRMRAL---QRDVKSRIAEVRDARWSDFLEGLAPSQRSYYRL 238
A A + A R E RM L RD ++ E D W DF + L +L
Sbjct: 62 AATAPVAAARRVDEEEEEERMDQLWERDRDARAGDEERMDLLWEDFNDELL------LQL 115
Query: 239 ARTLKSDTVVTMPPLVGPSGRLTAFDDDEK 328
R + PP PS A DDD++
Sbjct: 116 RRRQQQRAAAGTPPSPSPSPAAAADDDDDE 145
>11_01_0448 -
3469398-3469676,3470015-3470284,3470386-3470476,
3470581-3470690,3470867-3471136,3471768-3471914
Length = 388
Score = 28.3 bits (60), Expect = 3.7
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +2
Query: 161 IAEVRDARWSDFLEGLAPSQRSYYRL-ARTLKSDTVVTMPPLVGPS 295
+A + W L+GLA + +YY+ AR K TVV++P GPS
Sbjct: 144 LAGSNNESWCQGLDGLASREAAYYQQGARFAKWRTVVSIPN--GPS 187
>06_03_1488 +
30484904-30485134,30485239-30487159,30487255-30487691,
30487777-30487983
Length = 931
Score = 27.9 bits (59), Expect = 5.0
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +3
Query: 15 RTSFTASNCPTILGNSLELRTPRY 86
RT FTAS CPTI + + RY
Sbjct: 220 RTVFTASGCPTITSSRHRMEEGRY 243
>07_01_0760 -
5844349-5844401,5844521-5844665,5844782-5845297,
5845405-5845596,5845686-5845817,5845926-5846069
Length = 393
Score = 27.5 bits (58), Expect = 6.5
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -2
Query: 495 LIKSLTSIGVTGGNTSEGGKQAXRSTSLSTNS 400
LI +T + VTGG T +G + S TNS
Sbjct: 116 LISGVTGLTVTGGGTIDGNGKIWWQNSCKTNS 147
>04_04_0156 +
23160681-23160862,23161090-23161179,23163145-23163433,
23164574-23164669,23164755-23165123
Length = 341
Score = 27.5 bits (58), Expect = 6.5
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Frame = +2
Query: 296 GRLTAFDDDEKAELLADTLQTQCTPSTQSVD---PVHVELVDSEVERXACL-PPS 448
G L +DD A+ + ++QC + D PVHV ++ + A L PPS
Sbjct: 172 GPLRDYDDPANADFIESIKKSQCPQELEPADRRTPVHVNVIKRLEDYQAPLRPPS 226
>11_01_0020 + 140220-140312,141282-141665
Length = 158
Score = 27.1 bits (57), Expect = 8.7
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +2
Query: 284 VGPSGRLTAFDDDEKAELLADTLQTQCTPS--TQSVDPVHVELVDSEVE 424
+G F+D+EK EL+ D+ PS +DPV E VD +V+
Sbjct: 12 IGEEEEALVFEDEEKTELIRDSYLQLTGPSRAVLLIDPVTFE-VDLKVK 59
>06_01_0609 + 4404287-4405023,4405496-4405631,4405724-4405876,
4405985-4406128,4406224-4406375,4406453-4406552,
4406653-4406775,4406876-4407037,4407190-4407247,
4407324-4407502,4408294-4408402,4408567-4408637,
4408891-4408986,4409727-4409803,4410983-4411066,
4411473-4411607,4411744-4411819,4413072-4413167,
4413580-4413671,4413745-4413868,4413966-4414052
Length = 996
Score = 27.1 bits (57), Expect = 8.7
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = +2
Query: 125 RMRALQRDVKSRIAEVRDARWSDFLEGLAPSQRSYYRLARTLKSDTVVTMPPLVGPS 295
R LQ++V+ R D +E + ++ LA +LK+D V PP GPS
Sbjct: 857 RRMPLQQNVELAAHNARIYGVDDMIEFVVAD---FFHLAPSLKADLVFLSPPWGGPS 910
>03_05_0549 - 25444234-25446792
Length = 852
Score = 27.1 bits (57), Expect = 8.7
Identities = 29/103 (28%), Positives = 45/103 (43%), Gaps = 8/103 (7%)
Frame = +2
Query: 182 RWSDFLEGLAPSQRSYYRLARTLKS--DTVVTMPPLVGPSGRLTAFDDDEKA------EL 337
R+ ++ +A + R L R L+ DT V M +G L +DD+ A L
Sbjct: 286 RFDANVKQMADNGRLQPLLTRLLRGEPDTRVAMADYLG---ELALANDDKAAVAEQAGPL 342
Query: 338 LADTLQTQCTPSTQSVDPVHVELVDSEVERXACLPPSDVLPPV 466
L L+T TP+ ++ E+ SE L + VLPP+
Sbjct: 343 LVGMLRTGATPAKEATLKALREISSSEASAKLLLQRAGVLPPL 385
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,660,116
Number of Sequences: 37544
Number of extensions: 315133
Number of successful extensions: 872
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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