Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1362
         (508 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81034-4|CAB02729.1|  541|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z49126-7|CAD56566.1|  392|Caenorhabditis elegans Hypothetical pr...    28   4.5  
Z49126-6|CAA88942.2|  530|Caenorhabditis elegans Hypothetical pr...    28   4.5  
Z49066-3|CAD56555.1|  392|Caenorhabditis elegans Hypothetical pr...    28   4.5  
Z49066-2|CAD56554.1|  530|Caenorhabditis elegans Hypothetical pr...    28   4.5  
AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical ...    28   4.5  
Z49126-4|CAD56565.1|  336|Caenorhabditis elegans Hypothetical pr...    27   5.9  
U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myos...    27   5.9  
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr...    27   5.9  

>Z81034-4|CAB02729.1|  541|Caenorhabditis elegans Hypothetical
           protein C15C6.3 protein.
          Length = 541

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
 Frame = +2

Query: 314 DDDEKAELLADTLQTQCTP---STQSVDPVHVELVDSEVERXACLPPSDVLPP 463
           D+DE AE +A       +P   S++S  P   + VD  +E     PP    PP
Sbjct: 431 DEDEPAEPIAQKAAAPVSPNPASSRSASPEPAQQVDELLESEEAAPPPPPPPP 483


>Z49126-7|CAD56566.1|  392|Caenorhabditis elegans Hypothetical
           protein DH11.5b protein.
          Length = 392

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 25/112 (22%), Positives = 41/112 (36%), Gaps = 1/112 (0%)
 Frame = +2

Query: 173 RDARWSDFLEGLAPSQRSYYRLARTLKSDTVVTMPPLVGPSGRLTAFDDDEKAELLADTL 352
           R  R+  F   + P      RLAR        T   +   +   T +    +   L  +L
Sbjct: 120 RKKRFEPFCSPMVPHVPIRERLARR------GTSADMSDDASAYTCYAPRRRRMSLLQSL 173

Query: 353 QTQCTPSTQSVDPVHVELVDSE-VERXACLPPSDVLPPVTPMEVKDLIKDLR 505
           + Q      S   +H +  DS+   R  C P   + PPVTP +   +   ++
Sbjct: 174 RQQNRALADSGFDMHRQRTDSDSTNRDTCSPTQKISPPVTPTKKTTMASQIK 225


>Z49126-6|CAA88942.2|  530|Caenorhabditis elegans Hypothetical
           protein DH11.5a protein.
          Length = 530

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 25/112 (22%), Positives = 41/112 (36%), Gaps = 1/112 (0%)
 Frame = +2

Query: 173 RDARWSDFLEGLAPSQRSYYRLARTLKSDTVVTMPPLVGPSGRLTAFDDDEKAELLADTL 352
           R  R+  F   + P      RLAR        T   +   +   T +    +   L  +L
Sbjct: 120 RKKRFEPFCSPMVPHVPIRERLARR------GTSADMSDDASAYTCYAPRRRRMSLLQSL 173

Query: 353 QTQCTPSTQSVDPVHVELVDSE-VERXACLPPSDVLPPVTPMEVKDLIKDLR 505
           + Q      S   +H +  DS+   R  C P   + PPVTP +   +   ++
Sbjct: 174 RQQNRALADSGFDMHRQRTDSDSTNRDTCSPTQKISPPVTPTKKTTMASQIK 225


>Z49066-3|CAD56555.1|  392|Caenorhabditis elegans Hypothetical
           protein DH11.5b protein.
          Length = 392

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 25/112 (22%), Positives = 41/112 (36%), Gaps = 1/112 (0%)
 Frame = +2

Query: 173 RDARWSDFLEGLAPSQRSYYRLARTLKSDTVVTMPPLVGPSGRLTAFDDDEKAELLADTL 352
           R  R+  F   + P      RLAR        T   +   +   T +    +   L  +L
Sbjct: 120 RKKRFEPFCSPMVPHVPIRERLARR------GTSADMSDDASAYTCYAPRRRRMSLLQSL 173

Query: 353 QTQCTPSTQSVDPVHVELVDSE-VERXACLPPSDVLPPVTPMEVKDLIKDLR 505
           + Q      S   +H +  DS+   R  C P   + PPVTP +   +   ++
Sbjct: 174 RQQNRALADSGFDMHRQRTDSDSTNRDTCSPTQKISPPVTPTKKTTMASQIK 225


>Z49066-2|CAD56554.1|  530|Caenorhabditis elegans Hypothetical
           protein DH11.5a protein.
          Length = 530

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 25/112 (22%), Positives = 41/112 (36%), Gaps = 1/112 (0%)
 Frame = +2

Query: 173 RDARWSDFLEGLAPSQRSYYRLARTLKSDTVVTMPPLVGPSGRLTAFDDDEKAELLADTL 352
           R  R+  F   + P      RLAR        T   +   +   T +    +   L  +L
Sbjct: 120 RKKRFEPFCSPMVPHVPIRERLARR------GTSADMSDDASAYTCYAPRRRRMSLLQSL 173

Query: 353 QTQCTPSTQSVDPVHVELVDSE-VERXACLPPSDVLPPVTPMEVKDLIKDLR 505
           + Q      S   +H +  DS+   R  C P   + PPVTP +   +   ++
Sbjct: 174 RQQNRALADSGFDMHRQRTDSDSTNRDTCSPTQKISPPVTPTKKTTMASQIK 225


>AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical
           protein H43E16.1 protein.
          Length = 1203

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -2

Query: 480 TSIGVTGGNTSEGGKQAXRSTSLSTNSTCTGST 382
           TS G T G+++ G  Q+   +S  TN+  TGST
Sbjct: 772 TSSGSTVGSSTMGSTQSSLPSSTMTNTGSTGST 804


>Z49126-4|CAD56565.1|  336|Caenorhabditis elegans Hypothetical
           protein DH11.5c protein.
          Length = 336

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = +2

Query: 338 LADTLQTQCTPSTQSVDPVHVELVDSE-VERXACLPPSDVLPPVTPMEVKDLIKDLR 505
           L  +L+ Q      S   +H +  DS+   R  C P   + PPVTP +   +   ++
Sbjct: 113 LLQSLRQQNRALADSGFDMHRQRTDSDSTNRDTCSPTQKISPPVTPTKKTTMASQIK 169


>U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myosin
           protein 1 protein.
          Length = 1963

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = -2

Query: 156 DFTSRCRARIRIRFSAVGYLS*ARIEAFLALRSSLI 49
           D +SR    IRI F   GY+S A IE +L  +S ++
Sbjct: 244 DNSSRFGKFIRINFDMSGYISGANIEFYLLEKSRVL 279


>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical
           protein C41A3.1 protein.
          Length = 7829

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 4/72 (5%)
 Frame = +2

Query: 281 LVGPSGRLTAFDDDEKAELLADTLQTQCTPSTQSVDP----VHVELVDSEVERXACLPPS 448
           +V P+GRL AFD      + A++       S Q  +     +H E V S        P  
Sbjct: 202 MVSPNGRLAAFDRSANGFVRAESFAVAVLCSKQFAEENNLLIHCECVGSAFNSDGKTPSL 261

Query: 449 DVLPPVTPMEVK 484
               P++  EV+
Sbjct: 262 TAPNPISQYEVQ 273


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,602,728
Number of Sequences: 27780
Number of extensions: 238375
Number of successful extensions: 668
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 667
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)