Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1362
         (508 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   4.2  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   7.3  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   9.7  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 104 PTAENRIRMRALQRDVKSRI 163
           PT   + RMRAL  D  SR+
Sbjct: 388 PTPAQKARMRALNIDRVSRV 407


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -1

Query: 394 HRVHGLSAGRALGLQCIGQQLC 329
           H VH L+ G     Q + +QLC
Sbjct: 60  HNVHSLAFGAIQLRQLLKRQLC 81


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = +2

Query: 284 VGPSGRLTAF-DDDEKAELLADTLQ 355
           VG  GR T+F D +E A L  D ++
Sbjct: 545 VGNRGRATSFFDPEEDAPLRGDLVR 569


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,129
Number of Sequences: 438
Number of extensions: 2886
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13986774
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)