Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1361
         (386 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac...    30   0.15 
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |...    27   1.4  
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos...    25   4.1  
SPBC2D10.08c |||mitochondrial ribosomal protein subunit Yml6|Sch...    25   5.5  
SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inosito...    24   7.2  
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ...    24   7.2  
SPCC645.13 |||transcription elongation regulator|Schizosaccharom...    24   9.6  

>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
           Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 155

 Score = 29.9 bits (64), Expect = 0.15
 Identities = 16/39 (41%), Positives = 25/39 (64%)
 Frame = +2

Query: 269 MSNTVPTSSALRALALEYKSLQEEPVQGLRVKLLGEDNV 385
           M++  P+SS  R L  EY  L+E P+  +RV L+ +DN+
Sbjct: 1   MASASPSSS--RRLTKEYSDLREHPIPDIRVNLV-DDNL 36


>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 760

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 120 LCLPKFLVRCYCDELKCLVDTWTA 191
           LC+ + LV C C    C+V +W A
Sbjct: 105 LCVNENLVVCGCSNSSCIVYSWNA 128


>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
           Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 449

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +2

Query: 83  CVTRTCGCCSIDAMFTKISSSLLL*RVEMPGGYVDSI-KSSKVICLYN 223
           C   TC  C+ID MF+ I +S        P   ++ + K SK +C Y+
Sbjct: 183 CKRPTCMTCAIDDMFSSIYNSKNKSTFYGPTAVLNLMWKLSKSLCGYS 230


>SPBC2D10.08c |||mitochondrial ribosomal protein subunit
           Yml6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 261

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -3

Query: 168 ISTRHNNNELEILVNIASILQHPQVRV 88
           +STR  NNEL IL N  ++ Q P+ R+
Sbjct: 119 LSTRFINNELTILENPINLSQ-PKTRI 144


>SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inositol
           pyrophosphate synthase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 920

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
 Frame = +3

Query: 270 CLTLFQRVQPSGL*RWSTRV-CKKNLYKVCVLN 365
           C  LF+R  PSG   +S R+      Y  C L+
Sbjct: 839 CFELFERTNPSGNKEFSVRITLSPGCYAQCPLD 871


>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 509

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 8/31 (25%), Positives = 16/31 (51%)
 Frame = -2

Query: 139 RNFGKHSIDTAASTSTCHTLQTSTLKSLLII 47
           +NFG + + T +  STC       +K + ++
Sbjct: 258 KNFGSNYLATVSRDSTCRVFDLRAMKDVRVL 288


>SPCC645.13 |||transcription elongation
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 23.8 bits (49), Expect = 9.6
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 129 PKFLVRCYCDELKCLVDTW 185
           P+ +VRC C   + + DTW
Sbjct: 17  PETVVRCVCKSQEDIGDTW 35


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,631,533
Number of Sequences: 5004
Number of extensions: 31957
Number of successful extensions: 68
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 128344734
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)