Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1361
         (386 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0496 + 16549333-16549465,16549620-16550020,16550412-165508...    29   1.7  
01_01_1224 - 9888726-9888820,9889042-9889085,9889194-9889282,988...    28   3.0  
06_03_1005 + 26837047-26837093,26837644-26837731,26837854-268379...    27   5.2  
04_04_0158 - 23187070-23187264,23187347-23187477,23187550-231877...    26   9.1  

>04_03_0496 + 16549333-16549465,16549620-16550020,16550412-16550880,
            16552038-16552076,16553151-16553272,16553531-16553677,
            16554097-16554186,16554274-16554398,16554567-16554772,
            16554951-16555075,16555528-16555722,16556295-16556337,
            16556762-16557267,16558198-16558570,16559772-16560062,
            16560132-16561101,16561196-16561892,16562378-16562658,
            16562731-16563400,16563860-16564034,16565103-16565659
          Length = 2204

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 15/43 (34%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
 Frame = -3

Query: 219  YKHITLELFMLSTYPPGISTRHNNNELEILVNIA-SILQHPQV 94
            +  + LE F ++   PG++++  +N+ +I  NIA S+LQ  QV
Sbjct: 1864 WSRLILEEFAVALTAPGLTSKSFSNQQKIAANIALSLLQLSQV 1906


>01_01_1224 -
           9888726-9888820,9889042-9889085,9889194-9889282,
           9889390-9889434,9889849-9889956,9890042-9890127,
           9890324-9890411,9890669-9890872,9891251-9891326,
           9891429-9891478,9891753-9891815,9891942-9891995,
           9892079-9892181,9892266-9892368,9892563-9892623,
           9892746-9892786,9893183-9893348
          Length = 491

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = -3

Query: 204 LELFMLSTYPPGISTRHNNNELEILVNIASILQH 103
           L + +LSTYP          EL++L+NIAS+L++
Sbjct: 367 LSILLLSTYP--FMANLYGLELKVLINIASLLKN 398


>06_03_1005 +
           26837047-26837093,26837644-26837731,26837854-26837998,
           26838150-26838227,26838323-26838435,26838538-26838641,
           26838804-26839119
          Length = 296

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +2

Query: 293 SALRALALEYKSLQEEPVQGLRVKLLGED 379
           + +R LA E KSL E P +G++V +  +D
Sbjct: 54  NVVRQLAKELKSLDESPPEGIKVIVNDDD 82


>04_04_0158 -
           23187070-23187264,23187347-23187477,23187550-23187763,
           23187834-23187932,23188034-23188156,23188247-23188366,
           23188447-23188506,23188592-23188884,23189554-23189707,
           23189813-23190130,23190668-23190798,23191001-23191586,
           23192125-23192739
          Length = 1012

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 133 FGKHSIDTAASTSTCHTLQTST 68
           F KH+ D + +TS+C T  TST
Sbjct: 806 FSKHTDDLSETTSSCLTESTST 827


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,859,655
Number of Sequences: 37544
Number of extensions: 179117
Number of successful extensions: 367
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 367
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 648814968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)