Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1361
         (386 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025726-12|AAK73914.3|  243|Caenorhabditis elegans Ubiquitin co...    36   0.013
AC024748-1|AAF60411.2|  218|Caenorhabditis elegans Ubiquitin con...    31   0.37 
U00048-3|AAB53827.3|  315|Caenorhabditis elegans Nematode astaci...    28   2.6  
Z71186-1|CAA94913.1|  301|Caenorhabditis elegans Hypothetical pr...    27   3.5  
AL110500-10|CAB60431.1|  170|Caenorhabditis elegans Hypothetical...    27   6.1  

>AC025726-12|AAK73914.3|  243|Caenorhabditis elegans Ubiquitin
           conjugating enzyme protein3 protein.
          Length = 243

 Score = 35.5 bits (78), Expect = 0.013
 Identities = 17/38 (44%), Positives = 25/38 (65%)
 Frame = +2

Query: 272 SNTVPTSSALRALALEYKSLQEEPVQGLRVKLLGEDNV 385
           S    +S ALRAL +E K+LQ +PV+G  +  + EDN+
Sbjct: 3   SKASTSSGALRALTMELKNLQSQPVEGFTID-VNEDNL 39


>AC024748-1|AAF60411.2|  218|Caenorhabditis elegans Ubiquitin
           conjugating enzyme protein15 protein.
          Length = 218

 Score = 30.7 bits (66), Expect = 0.37
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = +2

Query: 287 TSSALRALALEYKSLQEEPVQGLRVKLLGEDNV 385
           +SSA+R L  +Y  L ++PV G++  L  EDN+
Sbjct: 17  SSSAVRRLQKDYAKLMQDPVDGIKA-LPNEDNI 48


>U00048-3|AAB53827.3|  315|Caenorhabditis elegans Nematode astacin
           protease protein 4 protein.
          Length = 315

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -3

Query: 174 PGISTRHNNNELEILVNIASILQHPQV 94
           PG+S  +NNN     +N  SI+ HPQV
Sbjct: 290 PGVSGNNNNNNNN-QINSNSIVNHPQV 315


>Z71186-1|CAA94913.1|  301|Caenorhabditis elegans Hypothetical
           protein F23D12.1 protein.
          Length = 301

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 126 LPKFLVRCYCDELKCLVDTW 185
           +P F+ R  C  L CLVD W
Sbjct: 129 IPHFIFRIICLSLICLVDAW 148


>AL110500-10|CAB60431.1|  170|Caenorhabditis elegans Hypothetical
           protein Y87G2A.9 protein.
          Length = 170

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 296 ALRALALEYKSLQEEPVQGLRVKLLGEDN 382
           AL+ L  EYK L   P +G+    + EDN
Sbjct: 5   ALKRLMTEYKELTTRPPEGIIAAPIDEDN 33


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,017,136
Number of Sequences: 27780
Number of extensions: 178333
Number of successful extensions: 409
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 409
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 576961812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)