Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1361
         (386 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   2.8  
AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.              21   6.5  

>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -3

Query: 168 ISTRHNNNELEILVNIASILQHPQVRVTH 82
           +S  HN N   +  N+A+ + H Q  V H
Sbjct: 675 LSPDHNGNYSCVARNLAAEVSHTQRLVVH 703


>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +2

Query: 122 MFTKISSSLLL*RVEMPGGYVDSIKSSKVIC 214
           M T  SSS L    E+P G V +I + +  C
Sbjct: 2   MATAASSSSLEKSYELPDGQVITIGNERFRC 32


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,930
Number of Sequences: 438
Number of extensions: 2038
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9391092
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)