Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1358
         (645 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z29094-16|CAA82345.2|  184|Caenorhabditis elegans Hypothetical p...    28   6.5  
Z81513-12|CAE17799.1|  417|Caenorhabditis elegans Hypothetical p...    27   8.6  
L14324-6|AAA28182.1| 3343|Caenorhabditis elegans Cadherin family...    27   8.6  

>Z29094-16|CAA82345.2|  184|Caenorhabditis elegans Hypothetical
           protein C07A9.9 protein.
          Length = 184

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
 Frame = +1

Query: 499 KYNQVDDHVV----CEYCEAEIKNWSEDECIEYAHVTLSTYCAY 618
           +Y  VDD V     C +C      W  D+C +  H +L  +C Y
Sbjct: 59  EYQYVDDDVPNSERCHFCMKRKGRWMGDDCSD--HSSLCKHCCY 100


>Z81513-12|CAE17799.1|  417|Caenorhabditis elegans Hypothetical
           protein F26D2.16 protein.
          Length = 417

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
 Frame = +3

Query: 6   LKNISFSHSKCAPFKLQNYTVLKRLSNGFIDKSV--DVGSISELQKFNFKINRLTSYISN 179
           L +  FS+  C    +    V++ + N  + K+V  DV SIS+   F     R+T  +S 
Sbjct: 320 LLSYKFSYKGCGRM-VSKEEVIEHIINLPLRKNVELDVKSISDSPSFYLIRMRITGLLSK 378

Query: 180 IFEYEFVVLEHNLSIV 227
            FE  F V +  + ++
Sbjct: 379 PFEISFKVEKEGIDLL 394


>L14324-6|AAA28182.1| 3343|Caenorhabditis elegans Cadherin family
            protein 3 protein.
          Length = 3343

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 213  NLSIVHVINAETKTKLGHINVSLNQNDPNV 302
            ++ I+HVIN     K  H+  SLN ++ N+
Sbjct: 1872 SVEIIHVINVHDLDKSDHLKFSLNNSNLNL 1901


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,986,227
Number of Sequences: 27780
Number of extensions: 273525
Number of successful extensions: 820
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 820
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)