Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1357
         (628 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0184 - 21006659-21009823                                         31   0.75 
04_01_0589 + 7704262-7704429,7704718-7705540,7705844-7706484           30   1.7  
10_08_0452 - 18038182-18038253,18038338-18038415,18038502-180385...    28   5.3  
01_01_1018 - 8046819-8046876,8046995-8047212,8048099-8048177,804...    28   7.0  
05_04_0073 + 17669311-17671635                                         27   9.2  

>11_06_0184 - 21006659-21009823
          Length = 1054

 Score = 31.1 bits (67), Expect = 0.75
 Identities = 17/42 (40%), Positives = 20/42 (47%)
 Frame = -1

Query: 238 GRRDAPEP*LAGVERER**PPLYPGDDHGDPAPAQDGEAVAP 113
           G +D P P   GV+R+   PP   GDD   P P  DG    P
Sbjct: 272 GDKDQPLPPDCGVKRQL--PPQSDGDDKQQPPPQSDGSDQPP 311


>04_01_0589 + 7704262-7704429,7704718-7705540,7705844-7706484
          Length = 543

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 10/29 (34%), Positives = 22/29 (75%)
 Frame = -1

Query: 478 LKEQPEPQIVSSESVRVQELIESGQEHVQ 392
           LK+QP+PQ++++++  V+EL++  +   Q
Sbjct: 89  LKDQPQPQVMANQTQTVEELLQQMRHRYQ 117


>10_08_0452 -
           18038182-18038253,18038338-18038415,18038502-18038579,
           18039112-18039168,18039276-18039349,18039424-18039495,
           18039609-18039670,18039861-18039962,18040378-18040490,
           18040809-18040940,18041156-18041243,18041617-18041711,
           18041793-18042023,18042567-18042680,18042765-18042866,
           18043091-18043207,18043301-18044146
          Length = 810

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -1

Query: 148 PAPAQDGEAVAPMAPKNRRPLRLKRITPPTRS 53
           PA   DG AVA    K   P++ KR + PT+S
Sbjct: 49  PAAEADGGAVAKPEEKPHSPVKPKRSSSPTKS 80


>01_01_1018 -
           8046819-8046876,8046995-8047212,8048099-8048177,
           8048455-8048540,8048698-8048983,8049063-8049205,
           8049308-8049508,8049626-8049754,8050463-8050738,
           8050823-8051098,8051364-8052364,8052452-8052634,
           8052865-8052937,8053205-8053313,8053622-8053785
          Length = 1093

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -2

Query: 594 YSMSYKGGSHGVSQNRGNHSMGHQSRLRNNVNAC 493
           ++  ++G S   S N  NH M HQ     N  AC
Sbjct: 301 HTSDHEGFSREKSSNLSNHFMHHQQGFMTNYGAC 334


>05_04_0073 + 17669311-17671635
          Length = 774

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +2

Query: 107 CHWRNRL-TILRWCWIPMVVPWIQRRLSTLALYTCKLRLW 223
           CHWRN L TIL      ++V + +  L T+ LY   + +W
Sbjct: 593 CHWRNPLTTILIHILFVILVLYPELILPTIFLYLFLIGVW 632


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,222,075
Number of Sequences: 37544
Number of extensions: 273895
Number of successful extensions: 1034
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1013
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1034
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)