Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1355
(565 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 31 0.12
SPAC23H4.06 |gln1||glutamate-ammonia ligase Gln1|Schizosaccharom... 29 0.47
SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces pom... 28 0.82
SPAC1039.07c |||4-aminobutyrate aminotransferase |Schizosaccharo... 27 1.9
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 26 4.4
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 4.4
SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma... 25 5.8
SPAC14C4.06c |||poly|Schizosaccharomyces pombe|chr 1|||Manual 25 7.7
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 25 7.7
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce... 25 7.7
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 31.1 bits (67), Expect = 0.12
Identities = 26/93 (27%), Positives = 38/93 (40%), Gaps = 3/93 (3%)
Frame = +2
Query: 131 PDKYQYQYQTSNGISGQEQGALVNEGREDASIAVQG--SSGYTAPDGTPIQITYIADANG 304
PD + G G+E + G A+ +G S GYT+P + + Y +
Sbjct: 1500 PDAAAFSPLVQGGSEGRE--GFGDYGLLGAASPYKGVQSPGYTSPFSSAMSPGYGLTSPS 1557
Query: 305 YQPSGAHLPTTPAPVP-IPDYIARAIEYIRTHP 400
Y PS T+PA +P P Y + Y T P
Sbjct: 1558 YSPSSPGYSTSPAYMPSSPSYSPTSPSYSPTSP 1590
>SPAC23H4.06 |gln1||glutamate-ammonia ligase
Gln1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 359
Score = 29.1 bits (62), Expect = 0.47
Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 10/81 (12%)
Frame = -3
Query: 431 LKYVGRPLAWV-GEF*CTRWPGRCNLGLGQGLG*-WADGHPKA----GIRW---RQQCK* 279
L Y RP W G F + P C +G G+ + H KA GI +
Sbjct: 141 LDYYDRPFGWPKGGFPGPQGPFYCGVGTGRVFARDIVEAHYKACLYAGINISGINAEVMP 200
Query: 278 SEWEYHQGQCSRLNLG-RRWM 219
S+WEY G C+ + +G + WM
Sbjct: 201 SQWEYQVGPCAGIEMGDQLWM 221
>SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 264
Score = 28.3 bits (60), Expect = 0.82
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 357 QITSPGPSSTSELTHPSQRSANVFKLYD 440
Q+T+ S TS +THP Q S +V +D
Sbjct: 152 QLTTENSSDTSSMTHPVQPSPSVLGSFD 179
>SPAC1039.07c |||4-aminobutyrate aminotransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 448
Score = 27.1 bits (57), Expect = 1.9
Identities = 20/84 (23%), Positives = 32/84 (38%)
Frame = +2
Query: 101 QIVSQDADVFPDKYQYQYQTSNGISGQEQGALVNEGREDASIAVQGSSGYTAPDGTPIQI 280
Q+ ++ +D+ PD S G E + + + V SS + G +
Sbjct: 96 QLATELSDLLPDGLDKTLFLSTGGEANEAALRMAKVYTNKYECVAFSSSWHGVTGGAASL 155
Query: 281 TYIADANGYQPSGAHLPTTPAPVP 352
T+ A GY P+ T P P P
Sbjct: 156 TFAAARRGYGPALPGSYTIPEPNP 179
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 25.8 bits (54), Expect = 4.4
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = +2
Query: 191 ALVNEGREDASIAVQGSSGYTAPDGTPIQITYIADANGYQPSGAHLPTTPAP 346
AL+ G S VQ + YT+ G P T +A A + +G ++ +P
Sbjct: 43 ALLPTGLLMGSPFVQSPTSYTSMHGLPFSTTQMAAAPAHPTTGYNVSRVTSP 94
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 25.8 bits (54), Expect = 4.4
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = +3
Query: 321 PICPLPQPLSQSQITSPGPSSTSELTHPSQRSANV 425
P P P P S I S P S L P+Q +A V
Sbjct: 147 PSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPV 181
>SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr
3|||Manual
Length = 462
Score = 25.4 bits (53), Expect = 5.8
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -1
Query: 469 CFNNSRPYQLSYNLNTLADLWLGWV 395
CF+ P Q NL + A+LW W+
Sbjct: 372 CFDGYLPAQERSNLKSKAELWNEWM 396
>SPAC14C4.06c |||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 307
Score = 25.0 bits (52), Expect = 7.7
Identities = 27/87 (31%), Positives = 33/87 (37%), Gaps = 2/87 (2%)
Frame = +3
Query: 162 ATESVARNKERS*TRAVRMHPSPSKVQAATLPLMVLPFRXXXXXXXXXXXXRV--PICPL 335
++E A KE V+ HPSP+ V TLP PF P C
Sbjct: 213 SSEMCASGKECKAADCVKGHPSPATV--TTLP----PFMSMSTIPIPCKYKPCLNPACRF 266
Query: 336 PQPLSQSQITSPGPSSTSELTHPSQRS 416
P +T PS T E T S+RS
Sbjct: 267 IHPTKSRNMTWRPPSKTEE-TSLSERS 292
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.0 bits (52), Expect = 7.7
Identities = 17/65 (26%), Positives = 27/65 (41%)
Frame = +2
Query: 215 DASIAVQGSSGYTAPDGTPIQITYIADANGYQPSGAHLPTTPAPVPIPDYIARAIEYIRT 394
D + S G+ P P + + + Y+P ++L + PAP P P Y +
Sbjct: 826 DEMASPSSSIGHPLPSPPPADFNSL-NVDFYEPH-SYLES-PAPEPQPSYEEESFNATVI 882
Query: 395 HPPKP 409
H P P
Sbjct: 883 HAPTP 887
>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1347
Score = 25.0 bits (52), Expect = 7.7
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +3
Query: 348 SQSQITSPGPSSTSELTHPSQRSANVFK 431
S+ +I++ P+S + LT PS RSA++ K
Sbjct: 1203 SKKRISNGSPTSWNLLTKPSPRSASLPK 1230
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,369,598
Number of Sequences: 5004
Number of extensions: 54490
Number of successful extensions: 193
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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