Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1354
         (775 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    30   0.091
AJ439353-9|CAD27931.1|  391|Anopheles gambiae transcription fact...    30   0.091
AB090820-1|BAC57915.1|  527|Anopheles gambiae gag-like protein p...    29   0.16 
AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    25   2.6  
AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcript...    24   4.5  
AF042732-2|AAC18057.1|  179|Anopheles gambiae TU37B2 protein.          24   6.0  
AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcript...    23   7.9  

>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 29.9 bits (64), Expect = 0.091
 Identities = 15/56 (26%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
 Frame = +2

Query: 614 QQTAEVYKAIEDKMTTAADKRDENLKKMIERLREHEEQVRKVRAG---NQEKFQQL 772
           QQ  E  +   +++ +A  K DE L++M  +L + ++ ++K++     N+++ QQL
Sbjct: 715 QQRREQLQRELNELNSAYAKEDERLQEMTRKLHQRQQHMKKLQQELLTNEQQLQQL 770



 Score = 25.4 bits (53), Expect = 2.0
 Identities = 13/65 (20%), Positives = 37/65 (56%)
 Frame = +2

Query: 545 INELRSRLKDHLEGVEKTRLTLEQQTAEVYKAIEDKMTTAADKRDENLKKMIERLREHEE 724
           ++EL+   +   E +++    L    A+  + +++ MT    +R +++KK+ + L  +E+
Sbjct: 707 MDELKRHTQQRREQLQRELNELNSAYAKEDERLQE-MTRKLHQRQQHMKKLQQELLTNEQ 765

Query: 725 QVRKV 739
           Q++++
Sbjct: 766 QLQQL 770



 Score = 25.0 bits (52), Expect = 2.6
 Identities = 20/95 (21%), Positives = 49/95 (51%), Gaps = 6/95 (6%)
 Frame = +2

Query: 500  LDAKMETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQQTAEVYKAI---EDKMTTAAD 670
            L++     +E+ +    +L  R + H++ +++  LT EQQ  ++   +   E + TT  +
Sbjct: 728  LNSAYAKEDERLQEMTRKLHQR-QQHMKKLQQELLTNEQQLQQLAGVVFEGETEETTLRE 786

Query: 671  KRDEN---LKKMIERLREHEEQVRKVRAGNQEKFQ 766
            + + +   L K+ + + E + ++ +VR   Q++ Q
Sbjct: 787  ELEHSRTILAKLQKGIEEEQAKLDQVRRTVQQEEQ 821


>AJ439353-9|CAD27931.1|  391|Anopheles gambiae transcription factor
           protein.
          Length = 391

 Score = 29.9 bits (64), Expect = 0.091
 Identities = 22/86 (25%), Positives = 39/86 (45%)
 Frame = +2

Query: 500 LDAKMETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQQTAEVYKAIEDKMTTAADKRD 679
           +D+  ++  +   A     +SRLK   E   K    +  +T E     E+ +  A     
Sbjct: 126 IDSGRKSFRKSTAAKTAATQSRLKQRFEAERKRTRVI--RTEEYIPTQEELLEEAEITER 183

Query: 680 ENLKKMIERLREHEEQVRKVRAGNQE 757
           EN+K + ER R  E + +K+R  N++
Sbjct: 184 ENIKSL-ERFRRMELEKQKIRPTNKK 208


>AB090820-1|BAC57915.1|  527|Anopheles gambiae gag-like protein
           protein.
          Length = 527

 Score = 29.1 bits (62), Expect = 0.16
 Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
 Frame = +1

Query: 418 SEDGQDRGGVPHPQRADE*--LHRRHQGGARRQDGDPRGKTRGLHQR 552
           ++ G  + GV  PQ++ +    HR+HQ    +Q+G  + +  G+HQ+
Sbjct: 248 NQRGNKQNGVNLPQQSAQRQPAHRQHQQWPHQQNGQQQQQRMGIHQQ 294


>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
 Frame = +2

Query: 446 SRIRSEQTNNFIVATKEAL-DAKMETHEEKREAYINELRSRLKDHLEGVEKTRLTLEQQT 622
           S+ R  +  + +   +E L DAK++ HE+ R     E+    K  + GV    + + Q T
Sbjct: 476 SKERIHELQSELDNVREQLGDAKIDKHEDARRKKKQEVVELFKLEVPGVYDRMINMCQPT 535

Query: 623 AEVYKAIEDKM 655
            + Y     K+
Sbjct: 536 HKRYNVAVTKV 546


>AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1209

 Score = 24.2 bits (50), Expect = 4.5
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +1

Query: 529 KTRGLHQRAA-LPSQGSS*GR*EDQVDPGTADRGSVQ 636
           +TR + +R   LP +G+  G       PGT DR S+Q
Sbjct: 2   ETRSMRKRTTRLPEEGAPTG-----AGPGTGDRASIQ 33


>AF042732-2|AAC18057.1|  179|Anopheles gambiae TU37B2 protein.
          Length = 179

 Score = 23.8 bits (49), Expect = 6.0
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +2

Query: 608 LEQQTAEVYKAIEDKMTTAADKRDENLKKMIERLRE 715
           L+ +  +  K +E +  T  +  D+N KK IER  E
Sbjct: 36  LKGEVEKQSKKLEKRKETLGESLDKNHKKKIERDEE 71


>AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1248

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 7/18 (38%), Positives = 15/18 (83%)
 Frame = +2

Query: 329 TPSVEEIQEKLKAAEERR 382
           TP++EE++ + + AE+R+
Sbjct: 298 TPAIEELENECRIAEQRQ 315


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 607,003
Number of Sequences: 2352
Number of extensions: 10716
Number of successful extensions: 34
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 80665782
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)