Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1353
         (795 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   4.3  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     23   4.3  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    22   5.7  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    22   5.7  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   10.0 
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   10.0 
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   10.0 

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 524 DLYKYFVYISVCMFNIRVLVVYHPLDL 604
           D+ +YF Y+   M    +   YHP DL
Sbjct: 326 DVVQYFGYLPQDMVGRSLFDFYHPEDL 352


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 524 DLYKYFVYISVCMFNIRVLVVYHPLDL 604
           D+ +YF Y+   M    +   YHP DL
Sbjct: 32  DVVQYFGYLPQDMVGRSLFDFYHPEDL 58


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 158 ENIGAGE*YYSALSRPPAR 214
           +  GAG+  Y  +SR PAR
Sbjct: 399 QGCGAGKENYQTMSRDPAR 417


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 158 ENIGAGE*YYSALSRPPAR 214
           +  GAG+  Y  +SR PAR
Sbjct: 399 QGCGAGKENYQTMSRDPAR 417


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -1

Query: 237 VHEHASSGRAGGRDRAE*YHSP 172
           VH    +GR G R RA  +  P
Sbjct: 536 VHRIGRTGRVGNRGRATSFFDP 557


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -2

Query: 266 SE*KESVRSLYTSTRRPGGPGVATEPSNI 180
           SE   S  S+  ST+     G+  EPSNI
Sbjct: 539 SENLSSGLSISDSTKPETSKGINAEPSNI 567


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = +2

Query: 173 GE*YYSALSRPPARPDDACSC 235
           G+ YY     P  RPD A  C
Sbjct: 321 GDCYYCISGAPIERPDHAVLC 341


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,260
Number of Sequences: 438
Number of extensions: 3782
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25125039
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)