Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1352
         (726 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor Mc...    32   0.096
SPCC4F11.03c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    28   1.2  
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo...    27   2.1  
SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8 |Schizos...    27   2.7  
SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine N-methy...    27   3.6  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    27   3.6  
SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr 3...    27   3.6  
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    26   6.3  
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote...    26   6.3  
SPAC9E9.06c |||threonine synthase |Schizosaccharomyces pombe|chr...    26   6.3  
SPCC1020.03 |||mitochondrial iron ion transporter|Schizosaccharo...    26   6.3  

>SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor
           Mcl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 31.9 bits (69), Expect = 0.096
 Identities = 22/91 (24%), Positives = 36/91 (39%)
 Frame = +1

Query: 238 VALQYSVQITKAKQQITGLQNQIATQQALYMKQQSGGADLFKQGHDPLGPLQSNFNEISI 417
           V L YS  +  A Q    + +    Q  LY         + K+ +DP  PL S+ ++   
Sbjct: 266 VELPYSTVVALAWQPFENVLSFTTNQGILYSCPDVIPKSILKEENDPTKPLTSSKSKNRT 325

Query: 418 TKDTQPSFGGSGNQQSRLTQWKLPSLDKEGE 510
           +K+    FG    Q   +      S ++E E
Sbjct: 326 SKELDDLFGSDDEQSQNVNDLDGNSANEENE 356


>SPCC4F11.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 335

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 23/73 (31%), Positives = 30/73 (41%), Gaps = 7/73 (9%)
 Frame = +1

Query: 373 DPLGPLQSNFNEISITKDTQPSFGGSG-------NQQSRLTQWKLPSLDKEGEGSEFSRA 531
           DP  P ++  N+  +TKD    FGGS        N   +       S D   + SEF   
Sbjct: 168 DPNMPPKTTVNDQDVTKDASQQFGGSNFSNYLRDNDSFQFGMNTDASGDAHLQASEFLLP 227

Query: 532 PGTAKSATSPQLN 570
                S+TSPQ N
Sbjct: 228 NLFGNSSTSPQDN 240


>SPAPB8E5.07c |||ribosome biogenesis protein
           Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1163

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -1

Query: 384 TEWVMTLLEQVCASTLLLHVQR 319
           T W MTL+E++C S +L+  QR
Sbjct: 225 THWPMTLVERLCRSCVLIVGQR 246


>SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = -2

Query: 407 SLKLLCNGPSGS*PCLNKSAPPLCCFMYNACCVAIWFCSPVICCFAL 267
           S  L+ +G  GS P +      L    Y+   V +W C+ V CC AL
Sbjct: 395 STTLMSDGVVGSKPYVAPEV--LTQKPYDPSAVDVWSCAIVYCCIAL 439


>SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine
           N-methytransferase Rmt3|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 543

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 212 NEFCCKSC*STFICCRS*FS 153
           +EFCC  C STF C +  +S
Sbjct: 56  HEFCCLFCDSTFTCLKDLWS 75


>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1588

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -3

Query: 628  PSPQSHDLLPMSNQAAI 578
            P P +HDLLP SN A +
Sbjct: 1404 PMPSAHDLLPTSNPAEL 1420


>SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 378

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = -2

Query: 650 ATSEVVSPQPSEPRPTPHVESGCNPSWLS*GLVADLAVPGARLNSEPSPSLS 495
           ATS+ V P  ++P P P   +   P+  S  +   +     ++ SEP+P ++
Sbjct: 316 ATSDAVPPAEAKPEPVPASAAERAPTSESTTVPETIVASTTKVISEPAPRVT 367


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 18/62 (29%), Positives = 27/62 (43%)
 Frame = -2

Query: 653 SATSEVVSPQPSEPRPTPHVESGCNPSWLS*GLVADLAVPGARLNSEPSPSLSREGNFH* 474
           SATS      PS P PTP   S  +P   S      +    +  + +PSP +S +   + 
Sbjct: 243 SATSSSSRLYPSRPAPTPPASSSSSPLLSS----QTVKTTTSNASRQPSPLVSSKSTDNI 298

Query: 473 VR 468
           +R
Sbjct: 299 IR 300


>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 592

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 10/41 (24%), Positives = 20/41 (48%)
 Frame = +1

Query: 331 KQQSGGADLFKQGHDPLGPLQSNFNEISITKDTQPSFGGSG 453
           K+Q+   +      DPL    +    +S+ K+ +P+F  +G
Sbjct: 95  KKQNKSKEALADAKDPLDESSNGIKNLSLNKNDEPAFQTNG 135


>SPAC9E9.06c |||threonine synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 514

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 692 TGWWDVWVGQSFPSATSEVVS 630
           +GW + W  +SFP    EV+S
Sbjct: 44  SGWIEAWKDKSFPEIAFEVMS 64


>SPCC1020.03 |||mitochondrial iron ion
           transporter|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 397

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +1

Query: 211 LAMAKGHSSVALQYSVQITKAKQQITGLQNQIATQQAL 324
           LA AKG   VALQ S+ +  A  Q+    + + T   L
Sbjct: 87  LAAAKGIGGVALQSSILVADAAHQLGDTLSDLVTLATL 124


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.313    0.129    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,969,817
Number of Sequences: 5004
Number of extensions: 60880
Number of successful extensions: 117
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)