Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1352
(726 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0392 + 17500748-17500877,17501006-17501280,17501321-175013... 33 0.23
09_06_0310 - 22212348-22212695,22213561-22213766,22213796-222139... 31 0.70
03_03_0217 + 15500943-15502196 30 2.2
04_03_0781 + 19572795-19573540,19573906-19573956,19574179-195742... 29 2.8
02_01_0451 - 3237849-3238061,3238142-3238268,3238418-3238656,323... 29 2.8
11_06_0213 - 21321676-21322069,21322311-21322507,21322818-213234... 29 3.8
11_04_0025 + 12382485-12382823,12382835-12382894,12382960-123830... 28 6.6
03_05_0932 + 28924891-28924935,28925982-28926062,28926464-289265... 28 6.6
12_01_0934 - 9273325-9273807,9273898-9274062,9274155-9274235,927... 28 8.7
10_08_0372 + 17280560-17280811,17280901-17281065,17281305-172814... 28 8.7
07_03_1791 - 29552218-29552427,29552858-29553358,29560369-295604... 28 8.7
07_01_0467 - 3524598-3524837,3524939-3525466,3526242-3526892,352... 28 8.7
03_06_0694 - 35596483-35597082 28 8.7
03_06_0088 - 31562596-31563096 28 8.7
>10_08_0392 +
17500748-17500877,17501006-17501280,17501321-17501388,
17501516-17501632,17501802-17501943,17502622-17502912,
17503507-17503650
Length = 388
Score = 33.1 bits (72), Expect = 0.23
Identities = 21/66 (31%), Positives = 33/66 (50%)
Frame = +1
Query: 361 KQGHDPLGPLQSNFNEISITKDTQPSFGGSGNQQSRLTQWKLPSLDKEGEGSEFSRAPGT 540
K P PL + ++++ KD++P GG G ++ + W + +G S F P T
Sbjct: 326 KLADGPSPPLPISSSQMAEMKDSEPLLGGGGGAAAKSSPWN----EVKGLQS-FDEVPRT 380
Query: 541 AKSATS 558
AKSA S
Sbjct: 381 AKSAFS 386
>09_06_0310 -
22212348-22212695,22213561-22213766,22213796-22213905,
22214351-22214427,22214466-22214486,22214518-22215651
Length = 631
Score = 31.5 bits (68), Expect = 0.70
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -2
Query: 656 PSATSEVVSPQPSEPRPTPHVES 588
PS +S SP PS+P+P PH ++
Sbjct: 24 PSTSSSQKSPSPSQPQPQPHAQA 46
>03_03_0217 + 15500943-15502196
Length = 417
Score = 29.9 bits (64), Expect = 2.2
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = -2
Query: 344 PLCCFMYNACCVAIWFCSPVIC 279
P CC +++A C+ +W + V C
Sbjct: 170 PGCCHVFHAACIDVWLAAHVTC 191
>04_03_0781 +
19572795-19573540,19573906-19573956,19574179-19574251,
19574772-19574876
Length = 324
Score = 29.5 bits (63), Expect = 2.8
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -2
Query: 659 FPSATSEVVSPQPSEPRPTP 600
FPS T+ +PQP P PTP
Sbjct: 113 FPSTTTTAPAPQPPTPTPTP 132
>02_01_0451 -
3237849-3238061,3238142-3238268,3238418-3238656,
3238937-3239151,3239569-3240031,3240562-3240715,
3241724-3241833,3242540-3242797,3242843-3242854,
3243492-3243545,3244202-3244312,3244390-3244545,
3244798-3245201,3245405-3245501,3246041-3246050,
3246097-3246164,3246652-3246762,3246874-3247074,
3247384-3247485,3247980-3248087,3248209-3248411,
3248563-3248680,3248774-3248854,3248958-3249500,
3249602-3249730
Length = 1428
Score = 29.5 bits (63), Expect = 2.8
Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Frame = +1
Query: 274 KQQITGLQNQIATQQALYMKQQSGGADLFKQGHDPLGPLQSNFNE--ISITKDTQPSFGG 447
KQ I+ LQN T + L +++Q GGA QG D P QS+ ++ +S KDT G
Sbjct: 294 KQNISKLQNASETIENLDIEKQKGGA----QG-DVSEP-QSDLDQMLLSSVKDTSRDSSG 347
Query: 448 SGN 456
SG+
Sbjct: 348 SGD 350
>11_06_0213 -
21321676-21322069,21322311-21322507,21322818-21323477,
21323522-21323578,21324741-21324848
Length = 471
Score = 29.1 bits (62), Expect = 3.8
Identities = 11/40 (27%), Positives = 15/40 (37%)
Frame = +1
Query: 595 TWGVGRGSEGWGDTTSDVADGKDWPTHTSHQPVFDLVPEF 714
TWG GW + G+ W TH ++ P F
Sbjct: 404 TWGEHHNCTGWVHKYGRSSSGEHWDTHVPQDTWYERFPHF 443
>11_04_0025 +
12382485-12382823,12382835-12382894,12382960-12383073,
12383187-12383837
Length = 387
Score = 28.3 bits (60), Expect = 6.6
Identities = 19/83 (22%), Positives = 37/83 (44%)
Frame = +1
Query: 247 QYSVQITKAKQQITGLQNQIATQQALYMKQQSGGADLFKQGHDPLGPLQSNFNEISITKD 426
Q+ ++ KA+Q+I + + + + +Q + K +GP+QSN + + K
Sbjct: 246 QHQFKLEKAQQRIADRRERKVIEATIQANRQLVHEEKAKLDQLSIGPIQSNIDRLEARKI 305
Query: 427 TQPSFGGSGNQQSRLTQWKLPSL 495
+ N + L + KLP L
Sbjct: 306 DLIAQLKECNAELDLEKQKLPDL 328
>03_05_0932 +
28924891-28924935,28925982-28926062,28926464-28926512,
28926599-28926677,28926762-28926921,28927307-28927440,
28927814-28927882,28928064-28928151,28928396-28928471,
28929267-28929340,28929478-28929585,28929858-28930160,
28930483-28930587,28930670-28930750,28930838-28931852,
28932086-28932201
Length = 860
Score = 28.3 bits (60), Expect = 6.6
Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 7/93 (7%)
Frame = +1
Query: 454 NQQSRLTQWKLP------SLDKEGEGSEFSRAPGTAKSATSPQLNQLGLQPDSTWGVGRG 615
NQ+SR +W+ P SLD F+R +S ++++ ++PD +W V G
Sbjct: 452 NQRSR--KWQCPICLKNYSLDNIIIDPYFNRITALVQSC-GDDVSEIDVKPDGSWRVKGG 508
Query: 616 SEGWGDTTSDVADGK-DWPTHTSHQPVFDLVPE 711
+E G + DG PT T +P +V +
Sbjct: 509 AELKGLAQWHLPDGTLCMPTDTRSKPNIRIVKQ 541
>12_01_0934 -
9273325-9273807,9273898-9274062,9274155-9274235,
9274347-9274475,9274590-9274661,9274758-9274826,
9275143-9275514,9275590-9275703,9275729-9275848
Length = 534
Score = 27.9 bits (59), Expect = 8.7
Identities = 23/77 (29%), Positives = 31/77 (40%), Gaps = 13/77 (16%)
Frame = -2
Query: 671 VGQSFPSATSEVVSPQPSEPRPTP------HVESG------CNPSWLS*GLVADLAVPGA 528
+ PS T+ + P P E + P H+ +G SWLS A L+ P
Sbjct: 423 IRNKLPSTTTSPMKPLPVETKRGPLNQERKHIMTGKEIVPVFTKSWLSGSPTARLSSPRR 482
Query: 527 RLNSEPSPSLSR-EGNF 480
R + PSP R NF
Sbjct: 483 RFSGSPSPKPQRHRSNF 499
>10_08_0372 +
17280560-17280811,17280901-17281065,17281305-17281410,
17281432-17281487,17281607-17282201,17282863-17282975,
17283106-17283326,17284113-17284437
Length = 610
Score = 27.9 bits (59), Expect = 8.7
Identities = 15/28 (53%), Positives = 17/28 (60%)
Frame = +1
Query: 523 SRAPGTAKSATSPQLNQLGLQPDSTWGV 606
SRAPGT +P L + G PDS WGV
Sbjct: 358 SRAPGT-----NPPLCKRGDDPDSVWGV 380
>07_03_1791 -
29552218-29552427,29552858-29553358,29560369-29560449,
29563783-29564015,29564976-29565042
Length = 363
Score = 27.9 bits (59), Expect = 8.7
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 6/58 (10%)
Frame = +1
Query: 511 GSEFSRAPGTAKSATSPQLNQL-GLQPDSTWGVG----RGSEGWGDTTS-DVADGKDW 666
G+E +RA A ++ G P T+G+ GSE GD D ADG+DW
Sbjct: 291 GAELARALEQVPEAADAIVSNFEGSAPQFTFGLASDEENGSEDGGDDAGGDDADGEDW 348
>07_01_0467 -
3524598-3524837,3524939-3525466,3526242-3526892,
3527015-3527500,3527580-3527792,3527885-3528174,
3528276-3528418,3528633-3528855,3528983-3529160,
3529598-3529867
Length = 1073
Score = 27.9 bits (59), Expect = 8.7
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Frame = +1
Query: 28 NSGQPSAAQLRML---VQQIQMAVSAGYLNHQILNQPLA 135
N+GQ ++ Q+R L +QQI+M + HQ+ NQ LA
Sbjct: 698 NAGQAASKQIRALRKKLQQIEMLEAKQLDGHQLDNQQLA 736
>03_06_0694 - 35596483-35597082
Length = 199
Score = 27.9 bits (59), Expect = 8.7
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -1
Query: 561 RTCSRLGSTGGTAKFRA 511
RTC+RLG GG KF A
Sbjct: 73 RTCARLGGNGGQEKFAA 89
>03_06_0088 - 31562596-31563096
Length = 166
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = +1
Query: 601 GVGRGSEGWGDTTSDVADGKDWPTHTS 681
G GR G G DVADG WP S
Sbjct: 19 GGGRWHGGLGQLAEDVADGCIWPARES 45
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.313 0.129 0.380
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,859,476
Number of Sequences: 37544
Number of extensions: 467209
Number of successful extensions: 1263
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1263
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
- SilkBase 1999-2023 -