Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1352
         (726 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY578805-1|AAT07310.1|  753|Anopheles gambiae medea protein.           30   0.063
X95912-1|CAA65156.1|  696|Anopheles gambiae immune factor protein.     26   1.4  
EF990672-1|ABS30733.1|  466|Anopheles gambiae voltage-gated calc...    25   2.4  
M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles ...    24   4.2  
AF080562-1|AAC31942.1|  327|Anopheles gambiae Ultrabithorax home...    23   7.3  
AF444781-1|AAL37902.1| 1459|Anopheles gambiae Toll6 protein.           23   9.6  
AF080563-1|AAC31943.1|  310|Anopheles gambiae Ultrabithorax home...    23   9.6  

>AY578805-1|AAT07310.1|  753|Anopheles gambiae medea protein.
          Length = 753

 Score = 30.3 bits (65), Expect = 0.063
 Identities = 26/86 (30%), Positives = 37/86 (43%)
 Frame = +1

Query: 220 AKGHSSVALQYSVQITKAKQQITGLQNQIATQQALYMKQQSGGADLFKQGHDPLGPLQSN 399
           A+   S A QY  Q  + +QQ    Q+Q   QQ    +QQSG A              S 
Sbjct: 400 AQPSQSAAQQYQPQQQQQQQQQQQPQSQQQQQQQQQQQQQSGSA------------TWSG 447

Query: 400 FNEISITKDTQPSFGGSGNQQSRLTQ 477
            N ++ T+  QP    SG+ Q + +Q
Sbjct: 448 SNTLNYTQSIQPPAHASGSHQQQASQ 473


>X95912-1|CAA65156.1|  696|Anopheles gambiae immune factor protein.
          Length = 696

 Score = 25.8 bits (54), Expect = 1.4
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = +1

Query: 229 HSSVALQYSVQITKAKQQITGLQNQIATQQALYMKQQSGGADLFKQGHD 375
           HS+   Q +++   A QQ+   Q Q   QQ    + Q+G AD      D
Sbjct: 634 HSASNQQQAIKALLATQQLQQQQQQQQQQQQQQQQGQTGQADRIDNDED 682


>EF990672-1|ABS30733.1|  466|Anopheles gambiae voltage-gated calcium
           channel beta subunitprotein.
          Length = 466

 Score = 25.0 bits (52), Expect = 2.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 665 QSFPSATSEVVSPQPSEPRPTPHVES 588
           +++  AT   V P PS PRP P  E+
Sbjct: 418 EAYWRATHPPVRPTPSVPRPLPSQEA 443


>M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles
           gambiae RT2 retroposon. ).
          Length = 1222

 Score = 24.2 bits (50), Expect = 4.2
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +3

Query: 411 IHHERYTTVFWWKWKSAVSPNSVEVA 488
           +H + +  +FWW    A   N+ EVA
Sbjct: 335 LHQDPHRNIFWWSPLLARLRNNCEVA 360


>AF080562-1|AAC31942.1|  327|Anopheles gambiae Ultrabithorax
           homeotic protein IIa protein.
          Length = 327

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
 Frame = -2

Query: 722 SQSNSGTRSKTGWWDVW---VGQSFPSATSEVVSPQPSEPRPT-PHVESGCNP 576
           +  N+GT +  G+ DVW    G +  + T    S  P++   + P   S C P
Sbjct: 94  TSGNNGTDTSNGYKDVWNANSGATNGATTGATGSNVPAQQNSSVPVRPSACTP 146


>AF444781-1|AAL37902.1| 1459|Anopheles gambiae Toll6 protein.
          Length = 1459

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 13/61 (21%), Positives = 21/61 (34%)
 Frame = -2

Query: 428 VSFVMDISLKLLCNGPSGS*PCLNKSAPPLCCFMYNACCVAIWFCSPVICCFALVICTEY 249
           ++ +  +  KL+ N      P +        C  YN  C A+  C     C   + C   
Sbjct: 739 INDIETVYCKLMYNRERSYIPLIEAEPKHFLC-SYNTHCFALCHCCEFDACDCEMTCPNN 797

Query: 248 C 246
           C
Sbjct: 798 C 798


>AF080563-1|AAC31943.1|  310|Anopheles gambiae Ultrabithorax
           homeotic protein IVa protein.
          Length = 310

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
 Frame = -2

Query: 722 SQSNSGTRSKTGWWDVW---VGQSFPSATSEVVSPQPSEPRPT-PHVESGCNP 576
           +  N+GT +  G+ DVW    G +  + T    S  P++   + P   S C P
Sbjct: 94  TSGNNGTDTSNGYKDVWNANSGATNGATTGGTGSNVPAQQNSSVPVRPSACTP 146


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.313    0.129    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 779,222
Number of Sequences: 2352
Number of extensions: 17283
Number of successful extensions: 24
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 74012934
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)