Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1352
(726 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75525-2|CAA99763.1| 1390|Caenorhabditis elegans Hypothetical pr... 33 0.16
U42436-6|AAM15564.1| 615|Caenorhabditis elegans Not-like (yeast... 33 0.27
U42436-5|AAF99894.2| 796|Caenorhabditis elegans Not-like (yeast... 33 0.27
U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 31 0.63
AL132904-19|CAD91707.1| 371|Caenorhabditis elegans Hypothetical... 31 1.1
AL032654-5|CAD91715.2| 516|Caenorhabditis elegans Hypothetical ... 31 1.1
AL032654-4|CAA21721.2| 552|Caenorhabditis elegans Hypothetical ... 31 1.1
Z78419-5|CAB01703.1| 313|Caenorhabditis elegans Hypothetical pr... 28 5.9
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ... 28 5.9
U58748-9|AAB52969.3| 542|Caenorhabditis elegans Hypothetical pr... 28 7.8
U58748-8|AAM97986.1| 497|Caenorhabditis elegans Hypothetical pr... 28 7.8
L14730-2|AAB37562.2| 187|Caenorhabditis elegans C.elegans homeo... 28 7.8
AY647457-1|AAT67384.1| 187|Caenorhabditis elegans homeobox gene... 28 7.8
>Z75525-2|CAA99763.1| 1390|Caenorhabditis elegans Hypothetical protein
C03D6.4 protein.
Length = 1390
Score = 33.5 bits (73), Expect = 0.16
Identities = 22/74 (29%), Positives = 32/74 (43%)
Frame = +1
Query: 367 GHDPLGPLQSNFNEISITKDTQPSFGGSGNQQSRLTQWKLPSLDKEGEGSEFSRAPGTAK 546
G++P P S S + FGG GNQQ + Q S + G ++ + AP T
Sbjct: 1223 GNNPFAPKTSTGTSAS---SSSWLFGGGGNQQQQQQQKPSFSFNTAGSSAQQASAPATGT 1279
Query: 547 SATSPQLNQLGLQP 588
S+ + G QP
Sbjct: 1280 SSVFGGAPKFGSQP 1293
>U42436-6|AAM15564.1| 615|Caenorhabditis elegans Not-like (yeast
ccr4/not complexcomponent) protein 4, isoform b protein.
Length = 615
Score = 32.7 bits (71), Expect = 0.27
Identities = 23/64 (35%), Positives = 32/64 (50%)
Frame = -2
Query: 683 WDVWVGQSFPSATSEVVSPQPSEPRPTPHVESGCNPSWLS*GLVADLAVPGARLNSEPSP 504
W+ +G S PSA S +V +PS PT ++SG N L G + P R + P P
Sbjct: 237 WEALLGLSSPSAQSTIV--EPSSLFPTFKMDSGFNSQSLF-GTHTS-STPSFRREASPPP 292
Query: 503 SLSR 492
L+R
Sbjct: 293 GLAR 296
>U42436-5|AAF99894.2| 796|Caenorhabditis elegans Not-like (yeast
ccr4/not complexcomponent) protein 4, isoform a protein.
Length = 796
Score = 32.7 bits (71), Expect = 0.27
Identities = 23/64 (35%), Positives = 32/64 (50%)
Frame = -2
Query: 683 WDVWVGQSFPSATSEVVSPQPSEPRPTPHVESGCNPSWLS*GLVADLAVPGARLNSEPSP 504
W+ +G S PSA S +V +PS PT ++SG N L G + P R + P P
Sbjct: 418 WEALLGLSSPSAQSTIV--EPSSLFPTFKMDSGFNSQSLF-GTHTS-STPSFRREASPPP 473
Query: 503 SLSR 492
L+R
Sbjct: 474 GLAR 477
>U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 7 protein.
Length = 401
Score = 31.5 bits (68), Expect = 0.63
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 665 QSFPSATSEVVSPQPSEPRPTPHVESGCNP 576
+S P+AT+ P P P+P P+VE P
Sbjct: 16 ESAPAATTPQPPPPPPPPKPAPYVEQSAQP 45
>AL132904-19|CAD91707.1| 371|Caenorhabditis elegans Hypothetical
protein Y111B2A.26 protein.
Length = 371
Score = 30.7 bits (66), Expect = 1.1
Identities = 31/125 (24%), Positives = 52/125 (41%), Gaps = 1/125 (0%)
Frame = +1
Query: 223 KGHSSVALQYSVQITKAKQQITGLQNQIATQQALYMKQQSGGADLFKQGHDPLGPLQSNF 402
+G S QY VQI Q+ LQN+ + + + S +Q + L LQ+
Sbjct: 84 EGASESTQQYQVQIASLTSQVESLQNKTTEWKKKFETEVSAR----QQTQEALTSLQNVV 139
Query: 403 NEISITKDTQPSFGGSGNQQSRLTQWKLPSLDKE-GEGSEFSRAPGTAKSATSPQLNQLG 579
E+SI + +F N + Q + +L++E + E K A+ + +
Sbjct: 140 RELSIDHEKDSAFASHRNLE---LQTMIGTLNEEIAQIREDLDRQSLGKQASEEESERRQ 196
Query: 580 LQPDS 594
LQ DS
Sbjct: 197 LQLDS 201
>AL032654-5|CAD91715.2| 516|Caenorhabditis elegans Hypothetical
protein Y52B11A.3b protein.
Length = 516
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 7/73 (9%)
Frame = +1
Query: 517 EFSRAPGTAKSATSPQLNQLGLQPDSTWGVGRGSEGWGDTTSDVADGK-------DWPTH 675
+ ++ P TS N+LG+ + + G+G ++D DW
Sbjct: 96 DLTKLPSPLPPTTSDDKNKLGVPSSALFSTDPSENGYGARVETLSDNSGISFEHDDWTEL 155
Query: 676 TSHQPVFDLVPEF 714
T H + LVP F
Sbjct: 156 TEHNVIVSLVPVF 168
>AL032654-4|CAA21721.2| 552|Caenorhabditis elegans Hypothetical
protein Y52B11A.3a protein.
Length = 552
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 7/73 (9%)
Frame = +1
Query: 517 EFSRAPGTAKSATSPQLNQLGLQPDSTWGVGRGSEGWGDTTSDVADGK-------DWPTH 675
+ ++ P TS N+LG+ + + G+G ++D DW
Sbjct: 132 DLTKLPSPLPPTTSDDKNKLGVPSSALFSTDPSENGYGARVETLSDNSGISFEHDDWTEL 191
Query: 676 TSHQPVFDLVPEF 714
T H + LVP F
Sbjct: 192 TEHNVIVSLVPVF 204
>Z78419-5|CAB01703.1| 313|Caenorhabditis elegans Hypothetical
protein F26A3.5 protein.
Length = 313
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +1
Query: 340 SGGADLFKQGHDPLGPLQSNFNEISITKDTQPSFGGSGNQQS 465
SGG+ ++ +DPL P +N EI PS G S +Q+S
Sbjct: 59 SGGSSSSQRSNDPLLPASTNHPEI-FDDVLDPSGGSSSSQRS 99
>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
protein Y40C5A.3 protein.
Length = 2344
Score = 28.3 bits (60), Expect = 5.9
Identities = 20/52 (38%), Positives = 28/52 (53%)
Frame = -2
Query: 656 PSATSEVVSPQPSEPRPTPHVESGCNPSWLS*GLVADLAVPGARLNSEPSPS 501
PS +S V P PSEP P + SG +P+ + ++P +N EPSPS
Sbjct: 551 PSPSSPVYGPTPSEP-AKPSMPSGESPA------QPEPSIPA--VNPEPSPS 593
>U58748-9|AAB52969.3| 542|Caenorhabditis elegans Hypothetical
protein ZK180.5a protein.
Length = 542
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = -2
Query: 650 ATSEVVSPQPSEPRPTPHVE 591
A +VV PQ EP P PHVE
Sbjct: 355 AEPQVVEPQVVEPVPQPHVE 374
>U58748-8|AAM97986.1| 497|Caenorhabditis elegans Hypothetical
protein ZK180.5b protein.
Length = 497
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = -2
Query: 650 ATSEVVSPQPSEPRPTPHVE 591
A +VV PQ EP P PHVE
Sbjct: 355 AEPQVVEPQVVEPVPQPHVE 374
>L14730-2|AAB37562.2| 187|Caenorhabditis elegans C.elegans homeobox
protein 16 protein.
Length = 187
Score = 27.9 bits (59), Expect = 7.8
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -2
Query: 662 SFPSATSEVVSPQPSEPRPTPHVESGCNPSWL 567
S P+ + +SP + P TP++ S P+W+
Sbjct: 23 STPATSPSSISPTFASPNGTPNIASSMYPAWV 54
>AY647457-1|AAT67384.1| 187|Caenorhabditis elegans homeobox gene 16
protein.
Length = 187
Score = 27.9 bits (59), Expect = 7.8
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -2
Query: 662 SFPSATSEVVSPQPSEPRPTPHVESGCNPSWL 567
S P+ + +SP + P TP++ S P+W+
Sbjct: 23 STPATSPSSISPTFASPNGTPNIASSMYPAWV 54
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.313 0.129 0.380
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,802,187
Number of Sequences: 27780
Number of extensions: 366652
Number of successful extensions: 913
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 913
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
- SilkBase 1999-2023 -