Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1347
         (570 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    91   1e-19
SPCP1E11.07c |cwf18||complexed with Cdc5 protein Cwf18 |Schizosa...    28   0.84 
SPBC6B1.05c |||ubiquitin-like conjugating enzyme|Schizosaccharom...    25   5.9  
SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch...    25   5.9  
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    25   5.9  
SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc...    25   7.8  
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S...    25   7.8  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    25   7.8  

>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
            Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 91.1 bits (216), Expect = 1e-19
 Identities = 46/174 (26%), Positives = 85/174 (48%), Gaps = 9/174 (5%)
 Frame = -2

Query: 560  AVCKVFSLDPTLDEEMTLVRRNLLRLIGVGEFSSAAEWREPCAACVLTELTCRVCN---- 393
            ++C VF L   L+ E+  ++++LL L+ + EFS+ A +R P     L ++ C+ C     
Sbjct: 2018 SICAVFELSHDLNLEVRFLKKSLLSLLQIQEFSTQAVFRYPSRRLSLDQIPCKQCGVHQD 2077

Query: 392  -----HXXXXXXXXXXXXDTERPACLCPTCGTAYDNQEIEWRLIETMNKRTMAYTLQDLI 228
                 H                    C +C   YD    E  L++ +  +   Y LQDLI
Sbjct: 2078 FDLCLHEHLWPTRDDMGTLVFSDGWSCSSCNLVYDRWVFEETLVDNLYHQLTLYQLQDLI 2137

Query: 227  CSRCHQVKRENLSVVCDCAGDFSLMVPVTEIKDQLMTFKTIAEYYQMPLLLEQI 66
            CS+C  VK+ +L   C C+G++ L +  T+ ++ L  ++++A++Y+  +L   +
Sbjct: 2138 CSKCKTVKQWSLKERCSCSGEWVLQLSPTKFREMLNVYQSVADFYEFSILQNSV 2191


>SPCP1E11.07c |cwf18||complexed with Cdc5 protein Cwf18
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 142

 Score = 28.3 bits (60), Expect = 0.84
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -2

Query: 326 PTCGTAYDNQEIEWRLIETMNKRTMAYTLQDLICSRCHQVKR 201
           PT     D +E   R +ET N+  +A+ +Q LI  R H  ++
Sbjct: 101 PTWDLERDLKE-RMRSLETQNQNAIAFYIQQLISERAHSTEK 141


>SPBC6B1.05c |||ubiquitin-like conjugating
           enzyme|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 649

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 155 MVPVTEIKDQLMTFKTIAEYYQMPLLL 75
           ++P   I  Q+  F + A+YYQ P  L
Sbjct: 158 LIPSGPILSQIREFLSTADYYQRPFFL 184


>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 204 FYLVTSATYKILQRIRHRTFVHRLD 278
           F + T    KILQR+RH+  V  L+
Sbjct: 317 FPITTVREVKILQRLRHKNIVRLLE 341


>SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1150

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = +1

Query: 409  VSSVSTHAAHGSRHSAALLNSPTPIRRSRLRRTS-VISSSKVGSRENTLQTAFDE 570
            +S +S    +  +H+A+      PIRR     TS V S S+V    +   T  DE
Sbjct: 1073 ISQMSLDERNTPKHTASTKRKRQPIRRVTTNLTSDVPSGSEVADTNSLSSTTKDE 1127


>SPCP1E11.04c |pal1||membrane associated protein Pal1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 425

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +1

Query: 421 STHAAHGSRHSAALLNSPTPIRRSRLRRTSVISSSK 528
           STH A  SRH +   N  +P  +S L+    I   K
Sbjct: 108 STHVASSSRHRSPSHNDSSPSTQSSLKSRGSIRRYK 143


>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +1

Query: 469 SPTPIRRSRLRRTSVISSSKVGSRENTLQT 558
           SP P RRSR    S+   S V S  N+ +T
Sbjct: 537 SPQPTRRSRTPIRSLSGRSSVASSRNSSRT 566


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 3971

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +1

Query: 451 SAALLNSPTPIRRSRLRRTSV-ISSSKV 531
           S+++LNS TPI  S +  TS  I+SS V
Sbjct: 386 SSSVLNSSTPITSSSILNTSTPITSSSV 413


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,987,748
Number of Sequences: 5004
Number of extensions: 35873
Number of successful extensions: 222
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)