Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1347
(570 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0390 + 18448671-18448889,18449567-18449632,18449702-184497... 89 2e-18
11_01_0334 + 2495275-2495433,2495553-2495661,2496311-2496378,249... 29 3.4
10_08_0179 + 15483854-15483968,15484196-15484302,15485211-154853... 29 3.4
01_01_0212 - 1814769-1814813,1814856-1814923,1816119-1816203,181... 28 4.6
12_02_0333 + 17660454-17660502,17660587-17660704,17661181-176612... 28 6.0
05_01_0189 + 1361743-1361934,1362454-1362623,1362966-1363500,136... 28 6.0
03_01_0506 + 3816676-3817971 28 6.0
02_05_0748 - 31463559-31464764 28 6.0
12_01_0961 + 9566730-9566998,9567096-9567187,9567294-9567427,956... 27 8.0
>02_03_0390 + 18448671-18448889,18449567-18449632,18449702-18449761,
18449864-18449959,18452287-18452447,18452669-18452790,
18452872-18453239,18453653-18453739,18453835-18453969,
18454349-18454471,18454771-18454854,18455023-18455187,
18455310-18455486,18455660-18455773,18455912-18456016,
18457056-18457174,18457244-18457385,18457461-18457555,
18457757-18457862,18458125-18458204,18458285-18458461,
18459828-18459912,18460024-18460104,18460208-18460351,
18460468-18460563,18460654-18460854,18461462-18461895,
18462417-18462478,18462622-18462872,18462956-18463030,
18463110-18463300,18463696-18463867,18463956-18464020,
18464646-18464778,18464861-18464962,18465047-18465130,
18465656-18465730,18465818-18465877,18465967-18466223,
18466560-18466608,18466781-18466941,18467013-18467079,
18467174-18467299,18467422-18467592,18468566-18468769,
18469059-18469165,18469608-18469737,18469774-18469959,
18470704-18470742
Length = 2202
Score = 89.0 bits (211), Expect = 2e-18
Identities = 48/169 (28%), Positives = 80/169 (47%)
Frame = -2
Query: 557 VCKVFSLDPTLDEEMTLVRRNLLRLIGVGEFSSAAEWREPCAACVLTELTCRVCNHXXXX 378
+C V +LD + ++ +R+NLL+L+ V EF+ A++++PCA+ L + C CN
Sbjct: 2034 ICAVLALDQNVQHDILRMRKNLLKLVRVKEFAPEAQFQDPCASFTLPNVICSYCNDCRDL 2093
Query: 377 XXXXXXXXDTERPACLCPTCGTAYDNQEIEWRLIETMNKRTMAYTLQDLICSRCHQVKRE 198
+ C P CG Y +++E L LQDL+C RC QVK
Sbjct: 2094 DLCRDSTLQGQEWRCAVPQCGQPYHREQMENAL------------LQDLVCLRCRQVKAA 2141
Query: 197 NLSVVCDCAGDFSLMVPVTEIKDQLMTFKTIAEYYQMPLLLEQIDFNLK 51
+LS C C G F ++ ++ F +A + LL + + + L+
Sbjct: 2142 HLSEQCSCGGAFRCKEESSQFLSKMRVFLNVAVSQKFELLQDVVQWILE 2190
>11_01_0334 +
2495275-2495433,2495553-2495661,2496311-2496378,
2496476-2496577,2496853-2497003,2497173-2497222,
2497432-2497557,2497761-2497863,2498104-2498204,
2498540-2498677,2498768-2498911,2499028-2499103,
2499224-2499309,2499432-2499560,2500572-2500674,
2500776-2500843,2500912-2501013,2501432-2501527,
2501723-2501848,2502152-2502254,2502427-2502569,
2503017-2503154,2503248-2503391,2503535-2503610,
2503883-2503968,2504135-2504212,2505180-2505254,
2505362-2505496,2506240-2506272,2507886-2507905,
2508570-2508666,2508899-2509000,2510612-2510725
Length = 1126
Score = 28.7 bits (61), Expect = 3.4
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = +1
Query: 394 LHTRHVSSVSTHAAHGSRHSAALLNSPTPIRRSRLRRTS--VISSSKVGSRENTLQTAFD 567
LH R S HA H +A L +P+P R R RR S V+ + G L++A++
Sbjct: 27 LHPRR--RFSAHAVHLRAAQSASLRAPSPGARRRRRRGSGLVVRAEMFGQLTTGLESAWN 84
Query: 568 E 570
+
Sbjct: 85 K 85
>10_08_0179 +
15483854-15483968,15484196-15484302,15485211-15485304,
15485537-15485637,15486143-15486199,15486614-15486761,
15486982-15487049
Length = 229
Score = 28.7 bits (61), Expect = 3.4
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = -2
Query: 500 RNLLRLIGVGEFSSAAEWREPCAACVLTELTCRVC--NH 390
RNLL+ G+ S+A + P + VL + +C+VC NH
Sbjct: 143 RNLLKACGIDFTSTAKGVQSPGSYLVLLKFSCQVCVLNH 181
>01_01_0212 -
1814769-1814813,1814856-1814923,1816119-1816203,
1816306-1816554
Length = 148
Score = 28.3 bits (60), Expect = 4.6
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +1
Query: 409 VSSVSTHAAHGSRHSAALLNSPTPIRRSRLRRTSVISSS 525
+S ++T + R LL++ P+RR+RLRR + +S
Sbjct: 13 LSPLTTSSPEPCRRRRLLLSAAAPLRRTRLRRRIAVVAS 51
>12_02_0333 +
17660454-17660502,17660587-17660704,17661181-17661255,
17661341-17661412,17661606-17661643,17661758-17661791,
17662396-17662519,17663334-17663417,17663991-17664056,
17664110-17664316
Length = 288
Score = 27.9 bits (59), Expect = 6.0
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -2
Query: 308 YDNQEIEWRLIETMNKRTMAYTLQDLICSRC 216
YD +E+ +E + R YT +D+IC RC
Sbjct: 259 YDLEEVP--PLEELEARAAPYTCRDIICCRC 287
>05_01_0189 +
1361743-1361934,1362454-1362623,1362966-1363500,
1365170-1365199
Length = 308
Score = 27.9 bits (59), Expect = 6.0
Identities = 14/26 (53%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = +2
Query: 488 GAGCAAPAS-SLRLRSDRGRTLCRRR 562
GAGCAA + RGRT CRRR
Sbjct: 22 GAGCAATQQPGNKAAHPRGRTACRRR 47
>03_01_0506 + 3816676-3817971
Length = 431
Score = 27.9 bits (59), Expect = 6.0
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -2
Query: 323 TCGTAYDNQEIEWRLIETMNK 261
TCG YD + WR+IE M++
Sbjct: 297 TCGEEYDLKRRSWRVIENMSE 317
>02_05_0748 - 31463559-31464764
Length = 401
Score = 27.9 bits (59), Expect = 6.0
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -2
Query: 323 TCGTAYDNQEIEWRLIETMNK 261
TCG YD ++ WR+IE M++
Sbjct: 267 TCGEEYDLEKGTWRVIENMSE 287
>12_01_0961 +
9566730-9566998,9567096-9567187,9567294-9567427,
9567542-9567591,9569026-9569100,9569179-9569734
Length = 391
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +1
Query: 454 AALLNSPTPIRRSRLRRTSVISSSKVG 534
AAL+ TP+R SR RR + +SS G
Sbjct: 54 AALVVEDTPVRESRRRRRASTTSSSAG 80
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,989,438
Number of Sequences: 37544
Number of extensions: 233294
Number of successful extensions: 701
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -