Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1347
         (570 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY061620-1|AAL29168.1|  711|Drosophila melanogaster SD09005p pro...   151   9e-37
AE014297-3316|AAF56126.3| 2236|Drosophila melanogaster CG6768-PA...   151   9e-37
AB035512-1|BAB17608.1| 2220|Drosophila melanogaster DNA polymera...   142   2e-34

>AY061620-1|AAL29168.1|  711|Drosophila melanogaster SD09005p protein.
          Length = 711

 Score =  151 bits (365), Expect = 9e-37
 Identities = 67/164 (40%), Positives = 102/164 (62%), Gaps = 2/164 (1%)
 Frame = -2

Query: 551  KVFSLDPTLDEEMTLVRRNLLRLIGVGEFSSAAEWREPCAACVLTELTCRVCNHXXXXXX 372
            K  S+D TL E++  +RRN+LRL+G+GEFS  AEW +PC + ++ E+ C+ CNH      
Sbjct: 540  KALSVDKTLAEQINELRRNMLRLVGIGEFSDLAEWEDPCDSHIINEVICKACNHCRDLDL 599

Query: 371  XXXXXXDTER--PACLCPTCGTAYDNQEIEWRLIETMNKRTMAYTLQDLICSRCHQVKRE 198
                    +   P  LC  C  AYDN+EIE R+++ + ++ M+Y LQDL CSRC ++KRE
Sbjct: 600  CKDKHRAMKDGVPVWLCAQCYVAYDNEEIEMRMLDALQRKMMSYVLQDLRCSRCSEIKRE 659

Query: 197  NLSVVCDCAGDFSLMVPVTEIKDQLMTFKTIAEYYQMPLLLEQI 66
            NL+  C CAG+F  ++   +I+  L TF  +A  ++M LL + +
Sbjct: 660  NLAEFCTCAGNFVPLISGKDIQTLLGTFNKVAANHKMQLLQQTV 703


>AE014297-3316|AAF56126.3| 2236|Drosophila melanogaster CG6768-PA
            protein.
          Length = 2236

 Score =  151 bits (365), Expect = 9e-37
 Identities = 67/164 (40%), Positives = 102/164 (62%), Gaps = 2/164 (1%)
 Frame = -2

Query: 551  KVFSLDPTLDEEMTLVRRNLLRLIGVGEFSSAAEWREPCAACVLTELTCRVCNHXXXXXX 372
            K  S+D TL E++  +RRN+LRL+G+GEFS  AEW +PC + ++ E+ C+ CNH      
Sbjct: 2065 KALSVDKTLAEQINELRRNMLRLVGIGEFSDLAEWEDPCDSHIINEVICKACNHCRDLDL 2124

Query: 371  XXXXXXDTER--PACLCPTCGTAYDNQEIEWRLIETMNKRTMAYTLQDLICSRCHQVKRE 198
                    +   P  LC  C  AYDN+EIE R+++ + ++ M+Y LQDL CSRC ++KRE
Sbjct: 2125 CKDKHRAMKDGVPVWLCAQCYVAYDNEEIEMRMLDALQRKMMSYVLQDLRCSRCSEIKRE 2184

Query: 197  NLSVVCDCAGDFSLMVPVTEIKDQLMTFKTIAEYYQMPLLLEQI 66
            NL+  C CAG+F  ++   +I+  L TF  +A  ++M LL + +
Sbjct: 2185 NLAEFCTCAGNFVPLISGKDIQTLLGTFNKVAANHKMQLLQQTV 2228


>AB035512-1|BAB17608.1| 2220|Drosophila melanogaster DNA polymerase
            epsilon protein.
          Length = 2220

 Score =  142 bits (345), Expect = 2e-34
 Identities = 64/162 (39%), Positives = 101/162 (62%)
 Frame = -2

Query: 551  KVFSLDPTLDEEMTLVRRNLLRLIGVGEFSSAAEWREPCAACVLTELTCRVCNHXXXXXX 372
            K  S+D TL E++  +RRN+LRL+G+GEFS  AEW +PC + ++ E+ C+ CNH      
Sbjct: 2057 KALSVDKTLAEQINELRRNMLRLVGIGEFSDLAEWEDPCDSHIINEVICKACNHCRDLDL 2116

Query: 371  XXXXXXDTERPACLCPTCGTAYDNQEIEWRLIETMNKRTMAYTLQDLICSRCHQVKRENL 192
                    ++   +   C  AYDN+EIE R+++ + ++ M+Y LQDL CSRC ++KRENL
Sbjct: 2117 CK------DKHRAMKDGCYVAYDNEEIEMRMLDALQRKMMSYVLQDLRCSRCSEIKRENL 2170

Query: 191  SVVCDCAGDFSLMVPVTEIKDQLMTFKTIAEYYQMPLLLEQI 66
            +  C CAG+F  ++   +I+  L TF  +A  ++M LL + +
Sbjct: 2171 AEFCTCAGNFVPLISGKDIQTLLGTFNKVAANHKMQLLQQTV 2212


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,812,586
Number of Sequences: 53049
Number of extensions: 405987
Number of successful extensions: 1211
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1202
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2234671092
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)