Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1346
         (323 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A11.04c |||transcription factor |Schizosaccharomyces pombe...    25   3.7  
SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces pomb...    24   4.9  
SPBC26H8.01 |thi2|nmt2|thiazole biosynthetic enzyme|Schizosaccha...    24   6.5  
SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    23   8.6  
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    23   8.6  
SPBC19G7.15 |nup44||nucleoporin Nup44|Schizosaccharomyces pombe|...    23   8.6  

>SPAPB1A11.04c |||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +1

Query: 139 SYHQ*SSPSETNWECYAFIELYSHIFL 219
           +Y   SSP E+   CY F+ L  H  L
Sbjct: 412 NYSAYSSPGESAGACYTFMHLLYHTTL 438


>SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 386

 Score = 24.2 bits (50), Expect = 4.9
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -3

Query: 270 SPMDFSNARSRAKPLP 223
           SP D  N RSRAK +P
Sbjct: 216 SPSDGQNVRSRAKKIP 231


>SPBC26H8.01 |thi2|nmt2|thiazole biosynthetic
           enzyme|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 328

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 292 T*W*VVTVAHGLQQCQEQSQAAAWL 218
           T W +V++ HGLQ C + +   A L
Sbjct: 201 TNWTLVSLNHGLQSCMDPNTINAHL 225


>SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 231

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +2

Query: 113 APPFGLTRGPTTSKVVQAKQIG 178
           APP G  R    S VVQ K+ G
Sbjct: 40  APPLGFLRPKLNSLVVQVKRQG 61


>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1159

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +2

Query: 20  RGVTEAHRHLQRKCATHLEIKF*DLSIVTTTAPPF 124
           +G  EA+  L  K +T       +   VTTTAP F
Sbjct: 689 KGKDEANDSLSAKASTPFSFAKPNTENVTTTAPQF 723


>SPBC19G7.15 |nup44||nucleoporin Nup44|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 403

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 33  KPIDIYNVNAPPTLRLSSKIS 95
           KP+D  N   P +L LSS IS
Sbjct: 118 KPVDETNATIPSSLLLSSGIS 138


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,396,900
Number of Sequences: 5004
Number of extensions: 25129
Number of successful extensions: 68
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 87815546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)