Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1346
         (323 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0531 + 4194403-4194417,4194776-4194850,4195136-4195237,419...    28   1.5  
03_06_0382 - 33530943-33530966,33531160-33531360,33535494-33537026     27   3.4  
12_02_1283 - 27532143-27532517,27532602-27532906,27533053-275333...    26   5.9  
05_03_0050 + 7809267-7809481,7809545-7809767,7810230-7810297,781...    26   5.9  
05_05_0091 + 22319411-22320901                                         26   7.8  
03_02_0027 + 5100865-5100878,5102241-5102708,5102795-5103021,510...    26   7.8  

>12_01_0531 +
           4194403-4194417,4194776-4194850,4195136-4195237,
           4195453-4195584,4196137-4196193,4196314-4196565,
           4196664-4196845,4197244-4197544
          Length = 371

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 172 NWECYAFIELYSHIFLARQRLGSAPGIAEVH 264
           N  C AF E     FL+  +LGS PG  ++H
Sbjct: 192 NGTCDAFYEDPDIFFLSTHQLGSYPGTGKIH 222


>03_06_0382 - 33530943-33530966,33531160-33531360,33535494-33537026
          Length = 585

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = +3

Query: 9   RIRHEGLLKPIDIYNVNAPPTLRLSSKISA*LQRLPHPSDSQEVLPPVK*SKRNK 173
           ++RH  L +P  + +  APP L LSS   +   R+  P D     PP + S R +
Sbjct: 26  KLRHGRLQEPRVMASPQAPP-LPLSSLQESRSARIRIPRDEPRPTPPARSSSREE 79


>12_02_1283 -
           27532143-27532517,27532602-27532906,27533053-27533311,
           27534412-27534618,27534726-27535181,27535866-27535963,
           27536657-27536785,27537371-27537605,27538932-27539039,
           27539110-27539160,27539261-27539445,27540207-27540274,
           27541535-27541600,27541678-27541730,27542536-27542653,
           27542743-27542844,27543525-27543682,27543763-27543840,
           27543978-27544069,27544308-27544458
          Length = 1097

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -3

Query: 189 RIAFPICFAWTTLLVVGPLVSPKGGAVVVTMLR 91
           ++ FP  + W T L++G L+S      VV +L+
Sbjct: 107 KLTFPYNWNWKTSLLLGGLLSATDPVAVVALLK 139


>05_03_0050 +
           7809267-7809481,7809545-7809767,7810230-7810297,
           7811979-7812131,7812188-7812380
          Length = 283

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -2

Query: 160 DYFTGGRTSCESEGWGSRCNYAEILELNLKV 68
           D +    T C+ EGW    +   IL L +K+
Sbjct: 130 DRYHPSHTDCDDEGWNLMLDGTNILRLPIKI 160


>05_05_0091 + 22319411-22320901
          Length = 496

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 85  LRSQHSYNDCPTLRTHKRSYHQ*SSPSETNW 177
           LR + S N CP +R+H +   Q +SP   +W
Sbjct: 289 LRIEMSSNSCPIIRSHCQQPWQ-TSPPGVDW 318


>03_02_0027 +
           5100865-5100878,5102241-5102708,5102795-5103021,
           5103670-5104577
          Length = 538

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 63  PPTLRLSSKISA*LQRLPHPSDSQEVLPP 149
           PP L L+   S+ L   P P+D Q+  PP
Sbjct: 322 PPALCLAPNASSSLFTAPVPADRQQFAPP 350


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,472,851
Number of Sequences: 37544
Number of extensions: 214881
Number of successful extensions: 498
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 498
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 423156300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)