Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1346
         (323 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132948-23|CAC51049.1|  429|Caenorhabditis elegans Hypothetical...    27   4.1  
U46753-2|AAA85760.1|  894|Caenorhabditis elegans Hypothetical pr...    26   7.2  
U13645-6|AAV34802.1|  457|Caenorhabditis elegans Hypothetical pr...    26   7.2  
U13645-5|AAM15541.1|  425|Caenorhabditis elegans Hypothetical pr...    26   7.2  
U13645-4|AAA20986.2|  529|Caenorhabditis elegans Hypothetical pr...    26   7.2  
Z81094-7|CAB03153.2|  960|Caenorhabditis elegans Hypothetical pr...    25   9.5  

>AL132948-23|CAC51049.1|  429|Caenorhabditis elegans Hypothetical
           protein Y39B6A.31 protein.
          Length = 429

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +3

Query: 21  EGLLKPIDIYNVNAPPTLRLSSKISA*LQ 107
           +GLLK +D+ +V  PP ++  SK+ + L+
Sbjct: 261 KGLLKSVDLLSVLKPPVIQTMSKMRSQLK 289


>U46753-2|AAA85760.1|  894|Caenorhabditis elegans Hypothetical
           protein C34F11.5 protein.
          Length = 894

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -2

Query: 169 FRLDYFTGGRTSCESEGWGSRCNYAEIL 86
           FR D+F G  T  E+EG    C + E L
Sbjct: 80  FRQDWFWGMITQTEAEGHLKDCRHGEFL 107


>U13645-6|AAV34802.1|  457|Caenorhabditis elegans Hypothetical
           protein C05D10.1c protein.
          Length = 457

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +1

Query: 211 IFLARQR-LGSAPGIAEVHGRR*PLTIRWGRTLV 309
           + +ARQ  L  APG+ E HG    L + W   LV
Sbjct: 275 LHMARQYILERAPGLLEEHGGHVKLKLTWAMKLV 308


>U13645-5|AAM15541.1|  425|Caenorhabditis elegans Hypothetical
           protein C05D10.1b protein.
          Length = 425

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +1

Query: 211 IFLARQR-LGSAPGIAEVHGRR*PLTIRWGRTLV 309
           + +ARQ  L  APG+ E HG    L + W   LV
Sbjct: 243 LHMARQYILERAPGLLEEHGGHVKLKLTWAMKLV 276


>U13645-4|AAA20986.2|  529|Caenorhabditis elegans Hypothetical
           protein C05D10.1a protein.
          Length = 529

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +1

Query: 211 IFLARQR-LGSAPGIAEVHGRR*PLTIRWGRTLV 309
           + +ARQ  L  APG+ E HG    L + W   LV
Sbjct: 347 LHMARQYILERAPGLLEEHGGHVKLKLTWAMKLV 380


>Z81094-7|CAB03153.2|  960|Caenorhabditis elegans Hypothetical
           protein F58G11.2 protein.
          Length = 960

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +1

Query: 88  RSQHSYNDCPTLRTHKRSYHQ*SSPSETNWECY 186
           R  H+YN   + R+H+    + S+P E N   Y
Sbjct: 198 RDHHNYNSQSSPRSHQGGQDRYSAPKEDNQRRY 230


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,007,802
Number of Sequences: 27780
Number of extensions: 154500
Number of successful extensions: 359
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 359
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 387641448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)