Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1346
         (323 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    25   0.30 
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    25   0.30 
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    25   0.30 
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    23   1.2  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    22   1.6  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   1.6  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   2.8  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    21   3.7  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    21   4.9  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 24.6 bits (51), Expect = 0.30
 Identities = 14/47 (29%), Positives = 19/47 (40%)
 Frame = -3

Query: 288 DGKWLPSPMDFSNARSRAKPLPG*ENVTI*LYKRIAFPICFAWTTLL 148
           D +  P+P    +       L G     I  Y RI FP+CF    L+
Sbjct: 376 DEEAAPAPQHLIHPGKDINKLYGMTPSDIDKYSRIVFPVCFVCFNLM 422


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 24.6 bits (51), Expect = 0.30
 Identities = 14/47 (29%), Positives = 19/47 (40%)
 Frame = -3

Query: 288 DGKWLPSPMDFSNARSRAKPLPG*ENVTI*LYKRIAFPICFAWTTLL 148
           D +  P+P    +       L G     I  Y RI FP+CF    L+
Sbjct: 376 DEEAAPAPQHLIHPGKDINKLYGMTPSDIDKYSRIVFPVCFVCFNLM 422


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 24.6 bits (51), Expect = 0.30
 Identities = 14/47 (29%), Positives = 19/47 (40%)
 Frame = -3

Query: 288 DGKWLPSPMDFSNARSRAKPLPG*ENVTI*LYKRIAFPICFAWTTLL 148
           D +  P+P    +       L G     I  Y RI FP+CF    L+
Sbjct: 314 DEEAAPAPQHLIHPGKDINKLYGMTPSDIDKYSRIVFPVCFVCFNLM 360


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 22.6 bits (46), Expect = 1.2
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 216 ENVTI*LYKRIAFPICF 166
           ++ TI +Y RI FPI F
Sbjct: 358 QSQTIDIYSRIGFPILF 374


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 22.2 bits (45), Expect = 1.6
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 103 YNDCPTLRTHKRSYHQ*SSPSE 168
           Y+   +LR HK  YH+  S +E
Sbjct: 42  YSSLNSLRNHKSIYHRQHSKNE 63


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect = 1.6
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -3

Query: 69  WVAHLRCRCLWASVTP 22
           W  H +CR   ASVTP
Sbjct: 430 WEHHFQCRYPNASVTP 445


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 2.8
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -3

Query: 294 PPDGKWLPSPMDFSNA 247
           PPD  W P  + F+NA
Sbjct: 104 PPDKVWKPDIVLFNNA 119


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.0 bits (42), Expect = 3.7
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 2   LVPNSARGVTEAHRHLQRK 58
           LV NSA G    H+ LQR+
Sbjct: 319 LVGNSAVGCWNEHQSLQRQ 337


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 20.6 bits (41), Expect = 4.9
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 2   LVPNSARGVTEAHRHLQRK 58
           LV NSA G    H+ LQR+
Sbjct: 322 LVNNSAIGCWNEHQPLQRQ 340


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,223
Number of Sequences: 438
Number of extensions: 1949
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7093251
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)