Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1344
(546 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce... 27 1.8
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|... 26 3.2
SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalyt... 26 4.2
SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom... 25 5.5
SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces... 25 5.5
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces... 25 7.3
SPAC1002.21 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 7.3
SPAC23H3.02c |ini1||RING finger-like protein Ini1|Schizosaccharo... 25 7.3
SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch... 25 9.6
SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha su... 25 9.6
>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 568
Score = 27.1 bits (57), Expect = 1.8
Identities = 25/115 (21%), Positives = 48/115 (41%)
Frame = +1
Query: 148 AGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRS 327
A A+ +A A +AEA E+ K+++ EP+++ +K+ + R
Sbjct: 89 AAEAEAAAAARAAAAKEAEAKRLEAAKNIVLKEPKDAPAAKKIAIIDSTNFRDSRVRVNG 148
Query: 328 PFGSRRSMLSVFFLTRASRLRRSGYNSVRCRGSE*SVDDFRSWRGVVLGRAASCC 492
R+ + F+ + R G ++C S V D S+ + LG ++ C
Sbjct: 149 WVHRMRTQKGIIFI-----ILRDGTGFLQCVLSG-KVYDRASYDFINLGPESTVC 197
>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 26.2 bits (55), Expect = 3.2
Identities = 32/133 (24%), Positives = 50/133 (37%), Gaps = 1/133 (0%)
Frame = +1
Query: 82 SNTAQYERNRSFGHLVHALGRAAGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESG 261
S+T+ R H L ++ L S G +S +++ GK+ V P +
Sbjct: 271 SSTSAKRRRPDHNH-TSTLDASSSNTSLASTGPMTVSS---STVERKGKEASEVNPNSTS 326
Query: 262 GSKQCDFTSRVSHSKRETRRRSPFGSRRSMLSVFFLTRASRLRRSGYNSVRC-RGSE*SV 438
DF + +S S+ ++S G R R R +G NS C + V
Sbjct: 327 SVTFSDFAAAISRSRCSRCKKSKKGCDRQ-------RPCGRCRDAGLNSEDCISDDDMPV 379
Query: 439 DDFRSWRGVVLGR 477
+ R RG GR
Sbjct: 380 SNARKPRGRGRGR 392
>SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalytic
subunit Pka1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 512
Score = 25.8 bits (54), Expect = 4.2
Identities = 18/60 (30%), Positives = 27/60 (45%)
Frame = -2
Query: 485 DAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSR 306
D +PS P +SS+ S RH + +L S + D LRD + + RVS+
Sbjct: 119 DNLIPSPLPESASRSSSQSSHQRHSRDGRGELGSEHGERRSAMDG--LRDRHIRKVRVSQ 176
>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 992
Score = 25.4 bits (53), Expect = 5.5
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Frame = +1
Query: 76 CDSNTAQYERNRSFGHLVHALGRAAGGAKLPSAGLCLNA--SKAEASLAESG 225
CD+ + S G L H + R GG + + + N+ SK E +A SG
Sbjct: 601 CDACLNLGTHSESIGDLEHQIRRYTGGISISPSAVTNNSDVSKYELGIAISG 652
>SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 312
Score = 25.4 bits (53), Expect = 5.5
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +1
Query: 436 VDDFRSWRGVVLGRAASCCDLLRLS 510
VD FR W + SC DLL+LS
Sbjct: 72 VDGFRLWITMEYCDGGSCLDLLKLS 96
>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 857
Score = 25.0 bits (52), Expect = 7.3
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
Frame = +1
Query: 277 DFTSR-----VSHSKRETRRRSPFGSRRSMLSVFFLTRASRLRRSG 399
DF+SR + + RRR P SRR + RA ++R SG
Sbjct: 5 DFSSRSLFLEAKEEEYKQRRRVPLDSRRRVRRACLSCRAKKIRCSG 50
>SPAC1002.21 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 148
Score = 25.0 bits (52), Expect = 7.3
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = +1
Query: 76 CDSNTAQYERNRSFGHLVHALGRAAGGAKLPSAGLCLNASK 198
C A + +S G +VHA RAA + A CL K
Sbjct: 54 CLHRCAFLDLTKSRGRVVHACSRAALPRAIADASHCLEEKK 94
>SPAC23H3.02c |ini1||RING finger-like protein
Ini1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 117
Score = 25.0 bits (52), Expect = 7.3
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -3
Query: 127 PNVRNCGSSRTEQYYYRNDKPSVG 56
P V N GSSRT+ +Y R + G
Sbjct: 86 PRVINLGSSRTDWFYERKKFKNAG 109
>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 593
Score = 24.6 bits (51), Expect = 9.6
Identities = 19/83 (22%), Positives = 34/83 (40%)
Frame = +1
Query: 100 ERNRSFGHLVHALGRAAGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQCD 279
E N F V + +G + G L+++ + + + +PRE ++
Sbjct: 15 EPNSHFRRTVEEKSQLSGTNEESLGGHTLSSNAFKNNSSSISPSSSAKDPREQ---RKRT 71
Query: 280 FTSRVSHSKRETRRRSPFGSRRS 348
F +HS R + PF SR+S
Sbjct: 72 FPLNDTHSSRARQHERPFRSRKS 94
>SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha
subunit Tfa1 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 448
Score = 24.6 bits (51), Expect = 9.6
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = -2
Query: 506 SLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSID 345
+++ + D L TT + STDY + +TE +L S K+T SI+
Sbjct: 349 NVDDEEDDDFLDVTTATSLQNKSTDYGSVKRKTE---NLNSDSDIQNKRTKSIE 399
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,271,901
Number of Sequences: 5004
Number of extensions: 46063
Number of successful extensions: 124
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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