Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1343
         (632 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.11c |||mitochondrial outer membrane protein |Schizosacc...    30   0.32 
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb...    28   1.3  
SPBC16G5.07c |||prohibitin |Schizosaccharomyces pombe|chr 2|||Ma...    27   3.0  
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos...    26   5.2  
SPAP8A3.09c |paa1||protein phosphatase regulatory subunit Paa1|S...    26   5.2  
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe...    25   6.9  
SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces pombe...    25   6.9  

>SPBC19C2.11c |||mitochondrial outer membrane protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 29.9 bits (64), Expect = 0.32
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -2

Query: 457 KNFAETFTESLYSSSLTILKLSINLGKEHS 368
           K +++ F+ES Y  + T+L  ++N G +HS
Sbjct: 6   KGWSDQFSESFYERATTLLTAALNKGTKHS 35


>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 983

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +2

Query: 263 PEESVFRECLLERCSVEENKIISGLETSEENMR 361
           P ES F E +L  C+V + K++S L T  ++ R
Sbjct: 232 PSESEFSERMLAFCAVHQRKLLSMLGTMLQSSR 264


>SPBC16G5.07c |||prohibitin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 354

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
 Frame = +2

Query: 260 QPEESVFRECLLERCSVEENKIISGLETSEENMRGFAMFLAEIYTQLE--DSQGGRIKTL 433
           +P ESV    + ++ S E  K    LE+  E  R  A+ +AE   Q E  DS+G +IKT+
Sbjct: 196 RPPESVVM-AMHQQVSAERQKRAEILES--EGKRQAAINVAEGDKQAEILDSEGQKIKTI 252

Query: 434 GESLCK 451
             +L +
Sbjct: 253 NSALAE 258


>SPBC17D11.05 |tif32||translation initiation factor
           eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 932

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 18/83 (21%), Positives = 32/83 (38%)
 Frame = +2

Query: 74  EITFDPGKFDTLCGPLVDSFASTLNDESYTRPLVDAIVNQSIGEANFRYNGARLCSMYDS 253
           E+ F P        P++   A + +   Y RPL   I+ +   + +  Y+   L  + D 
Sbjct: 388 EVEFHPLSICKKLQPIIKRLAESNDTAQYIRPLQQVILTRLFQQLSQVYDSISLKYVMDL 447

Query: 254 VAQPEESVFRECLLERCSVEENK 322
               E   F    +E+  +  NK
Sbjct: 448 ATFEEPYDFNPGQIEKFIMNGNK 470


>SPAP8A3.09c |paa1||protein phosphatase regulatory subunit
           Paa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 590

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 9/33 (27%), Positives = 15/33 (45%)
 Frame = -3

Query: 387 ISARNIANPRIFSSEVSKPLIILFSSTEQRSSR 289
           +    +  P +   E+ KP ++L   TEQ   R
Sbjct: 270 VKLAKVVGPSLIKDELIKPFVLLMKDTEQEVRR 302


>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 564

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 27/112 (24%), Positives = 46/112 (41%), Gaps = 2/112 (1%)
 Frame = +2

Query: 23  ENMDLRENIANLITVMCEITFDPGKFDTLCGPLVDSFASTLNDESYTRPLVDAIVNQSIG 202
           EN D+   +  L+  + +   DP   ++L   L+DS    L   +  R   ++      G
Sbjct: 157 ENADITITVLELLIELTDEDVDPDALNSLFTSLIDSGLLPLLSNTIKR-FDESNEEDRHG 215

Query: 203 EANFRYNGARLCSMYDSVAQ--PEESVFRECLLERCSVEENKIISGLETSEE 352
                     L S+ +S+     E +   E LL R SV+E  I + L+ + E
Sbjct: 216 VYCVLSLMENLLSVDNSICSIIVENTTLVEWLLSRSSVDETSISTNLQYAVE 267


>SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 306

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -1

Query: 461 AEKLCRDFHRESLFFLLD-YPQAEYKSRQGT*QIH 360
           A + C DF  E    LLD +P AE++ R G  ++H
Sbjct: 104 ASRKCYDFASE----LLDCFPNAEFRKRTGDIEVH 134


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,456,215
Number of Sequences: 5004
Number of extensions: 50767
Number of successful extensions: 184
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)