Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1343
(632 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0362 + 24716342-24716426,24716591-24717088,24717210-24717748 30 1.3
01_01_0953 - 7472173-7472178,7472216-7472311,7472370-7472462,747... 30 1.8
04_01_0052 - 548383-548494,548523-548592,549184-549364 29 2.3
11_03_0055 - 9356602-9356709,9357042-9357221 29 4.1
02_01_0503 + 3669758-3670059,3670351-3670870 29 4.1
07_01_1034 - 8962703-8962748,8962831-8962991,8963068-8963905,896... 28 7.1
04_04_1324 + 32659752-32661972,32662067-32662761 28 7.1
05_05_0207 + 23272777-23272977,23273831-23275330 27 9.4
03_05_0440 + 24322332-24322388,24323478-24323615,24323654-243237... 27 9.4
03_01_0645 - 4731037-4731543,4731706-4731933 27 9.4
>04_04_0362 + 24716342-24716426,24716591-24717088,24717210-24717748
Length = 373
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +2
Query: 62 TVMCEITFDPG-KFDTLCGPLVDSFA-STLNDESYTR 166
+V+ I +PG D CGPL+DSFA TLN T+
Sbjct: 158 SVVLFIVHNPGVSDDEACGPLIDSFAIKTLNPPQRTK 194
>01_01_0953 - 7472173-7472178,7472216-7472311,7472370-7472462,
7472855-7473019,7473689-7474821,7474902-7475426,
7477077-7477249,7478737-7478831,7478893-7481688
Length = 1693
Score = 29.9 bits (64), Expect = 1.8
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Frame = +2
Query: 338 ETSEENMRGFAMFLAEIYTQLEDSQG---GRIKTLGESLCKVFLHLLDTDKESNIKAVCQ 508
ET EN L + +L + GR+ TL SLCK + K+ IK
Sbjct: 1498 ETRAENAESKCTLLTDTNLELSEELSFLRGRVDTLENSLCKANQLKMSAAKDIGIKTKTI 1557
Query: 509 LLKLSGLALDADC 547
++ LAL+ +C
Sbjct: 1558 TDLVAKLALEREC 1570
>04_01_0052 - 548383-548494,548523-548592,549184-549364
Length = 120
Score = 29.5 bits (63), Expect = 2.3
Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 4/43 (9%)
Frame = +2
Query: 83 FDPGKFDTLCG----PLVDSFASTLNDESYTRPLVDAIVNQSI 199
FD G FDT+C P +DSFA+ D SY ++DA+V+ ++
Sbjct: 33 FDSGMFDTVCSIGQFPALDSFAAQEFD-SY--DVIDAVVSGAV 72
>11_03_0055 - 9356602-9356709,9357042-9357221
Length = 95
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/25 (56%), Positives = 18/25 (72%), Gaps = 4/25 (16%)
Frame = -1
Query: 137 KQMNPPRDHTRCQ-TCP---GQRLS 75
K+ N PRDH++C+ CP GQRLS
Sbjct: 55 KKKNEPRDHSQCKPECPWSFGQRLS 79
>02_01_0503 + 3669758-3670059,3670351-3670870
Length = 273
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = -2
Query: 616 HGAHERQRPAPPEPLERRVHPRRA 545
H AH Q PP P RR+ PR A
Sbjct: 8 HAAHRSQIEIPPRPPSRRLPPRTA 31
>07_01_1034 - 8962703-8962748,8962831-8962991,8963068-8963905,
8963991-8964128,8964206-8964355,8964436-8964683,
8964825-8964953,8965735-8965960,8966909-8966975,
8967488-8967551,8968902-8969000,8969074-8969157,
8969240-8969321,8969412-8969460,8969664-8969769,
8970650-8970734,8970814-8970917,8970994-8971109,
8971187-8971373,8972005-8972113,8972633-8972761,
8973365-8973449,8973812-8973947,8974078-8974230,
8974488-8974634,8974801-8974941,8975580-8975903
Length = 1400
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = -3
Query: 384 SARNIANPRIFSSEVSKPLIILFSSTEQRSSR 289
S ++N R FSS V KPL I +S+E R+ +
Sbjct: 913 SVPTVSNKRGFSSFVDKPLYISKASSEHRAQQ 944
>04_04_1324 + 32659752-32661972,32662067-32662761
Length = 971
Score = 27.9 bits (59), Expect = 7.1
Identities = 43/190 (22%), Positives = 87/190 (45%), Gaps = 5/190 (2%)
Frame = +2
Query: 8 SLEEAENMDLRENIANLITVMCEITFDPGKFDTLCGPLVDSFASTLNDESYTRPLVDAIV 187
S ++ N +L N+ ++ +C +T PG+ + GP+V+ T++ ES R A +
Sbjct: 28 SSKKDRNGELTANVR--LSTVCSVTRYPGRCEQSLGPVVN---DTIDPESVLR----AAL 78
Query: 188 NQSIGEANFRYNGARLCSMYDSVAQPEESVFREC--LLERCSVEENKIISGLETSE--EN 355
++ E +N + D A+ +S C LL+ ++E+ + ++ L+ E ++
Sbjct: 79 QVALEEVTSAFNRSMDVGK-DDDAKITKSAIEMCKKLLDD-AIEDLRGMASLKPEEVTKH 136
Query: 356 MRGFAMFLAEIYTQLEDSQGGRIK-TLGESLCKVFLHLLDTDKESNIKAVCQLLKLSGLA 532
+ +L+ + T + G K L E++ K+ + T+ SN A+ L A
Sbjct: 137 VNDLRCWLSSVMTYIYTCADGFDKPELKEAMDKLLQN--STELSSNALAIITSLGELMPA 194
Query: 533 LDADCPTGMH 562
++ TG H
Sbjct: 195 AKSNGSTGAH 204
>05_05_0207 + 23272777-23272977,23273831-23275330
Length = 566
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -2
Query: 607 HERQRPAPPEPLERRVHPRRAVRVEGQTRQLE 512
H P PP PL+ R ++VE QT +LE
Sbjct: 51 HHPPPPPPPPPLQLRPEEVELMKVEEQTVKLE 82
>03_05_0440 +
24322332-24322388,24323478-24323615,24323654-24323736,
24325038-24325128,24326091-24326189,24326356-24326418,
24327182-24327259,24329354-24329543,24329812-24330065,
24330159-24330531,24331193-24331276,24332085-24332371,
24332495-24332542,24333194-24333220,24333951-24333987,
24334063-24334250,24334343-24334521,24334595-24334877,
24335481-24335717,24335798-24335988,24336552-24336561,
24336844-24336984,24337073-24337288,24338437-24338727,
24338852-24339025
Length = 1272
Score = 27.5 bits (58), Expect = 9.4
Identities = 20/70 (28%), Positives = 32/70 (45%)
Frame = +2
Query: 347 EENMRGFAMFLAEIYTQLEDSQGGRIKTLGESLCKVFLHLLDTDKESNIKAVCQLLKLSG 526
+E A+ LAE++ + Q + T G S ++FL + + N + KL G
Sbjct: 307 DEGAHVAALALAEVFQRGGSPQDSQ--TPGRSGDRMFLSPVKSTDRKNADSEMGSSKLHG 364
Query: 527 LALDADCPTG 556
+DAD P G
Sbjct: 365 FQVDADFPEG 374
>03_01_0645 - 4731037-4731543,4731706-4731933
Length = 244
Score = 27.5 bits (58), Expect = 9.4
Identities = 22/61 (36%), Positives = 28/61 (45%)
Frame = +2
Query: 110 CGPLVDSFASTLNDESYTRPLVDAIVNQSIGEANFRYNGARLCSMYDSVAQPEESVFREC 289
C PLVDS AST + R VD +GE G LC +D+ P E ++ C
Sbjct: 22 CLPLVDSVASTATSKKRKRAGVD-----DVGEGESGEVGIELC--FDAAPLPLE--WQRC 72
Query: 290 L 292
L
Sbjct: 73 L 73
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,310,900
Number of Sequences: 37544
Number of extensions: 343323
Number of successful extensions: 1118
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1080
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1116
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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