Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1343
         (632 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.              24   1.1  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   3.3  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   7.5  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   7.5  
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         21   9.9  
AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-lik...    21   9.9  

>DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.
          Length = 150

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +2

Query: 335 LETSEENMRGFAMFLAEIYTQLEDSQGGRIKT 430
           L   EEN R +  FLA I+ Q     G  + T
Sbjct: 58  LINEEENFRNYGCFLACIWQQTGVMNGSELST 89


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +2

Query: 23  ENMDLRENIANLITVMCEITFDP 91
           +N  LRE +A   T  C    DP
Sbjct: 35  DNPSLREGLAGASTFRCVFVLDP 57


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 154 KLYQTLGGCHC 186
           K Y   GGCHC
Sbjct: 239 KWYLPSGGCHC 249


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 15/64 (23%), Positives = 26/64 (40%)
 Frame = +2

Query: 329 SGLETSEENMRGFAMFLAEIYTQLEDSQGGRIKTLGESLCKVFLHLLDTDKESNIKAVCQ 508
           SGL     + +     L + Y  LE   G   + L  S     + ++D D+++ +     
Sbjct: 15  SGLVNGGSHEKRLLNDLLDTYNVLERPVGNESEPLVLSFGLTLMQIIDVDEKNQLLITNL 74

Query: 509 LLKL 520
            LKL
Sbjct: 75  WLKL 78


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +1

Query: 484 VKHQSCLSTAQVVGSGP 534
           + H SC S  +VV  GP
Sbjct: 13  IVHASCASVPKVVYDGP 29


>AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-like
           protein protein.
          Length = 130

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -2

Query: 457 KNFAETFTESLYSSSLT 407
           K + ET+  S+Y  S+T
Sbjct: 64  KKYCETYKNSIYDVSMT 80


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,743
Number of Sequences: 438
Number of extensions: 3613
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)