Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1340
         (804 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ...    26   5.5  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    26   5.5  
SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomy...    25   9.5  
SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr 2|...    25   9.5  
SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyce...    25   9.5  

>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 726

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 15/41 (36%), Positives = 18/41 (43%)
 Frame = +1

Query: 511 KDTESDVHALAIDGPSHKMEQFLKRNYGVERLVRQNNNFAV 633
           KDT  D+       P H   + LK+N GVE L     N  V
Sbjct: 637 KDTVFDIIKQVETDPDHLKFKILKKNLGVEYLESYGLNIRV 677


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 13/46 (28%), Positives = 26/46 (56%)
 Frame = +1

Query: 139  DYNLMTDTFEGNIRTVRMLQDSLSKLIDVLGEYSSAAQGLNRVITT 276
            D + + D+   ++RT+R L+DS++ L       S+  + L  V+T+
Sbjct: 1633 DLSNIKDSLSEDLRTLRSLEDSVASLQKECKIKSNTVESLQDVLTS 1678


>SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 557

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/49 (24%), Positives = 23/49 (46%)
 Frame = -1

Query: 423 LAHLFLVVEQKQVLATNLQHADCLALTVFCILVFKDIHNMRWAEAKFFP 277
           +A+ FL  +  Q   +  Q+    ++ +F       I N+ W +A+ FP
Sbjct: 414 IAYHFLPADTTQNTNSGWQYVVLASIIIFLASYASGIGNIPWQQAELFP 462


>SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 554

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = +1

Query: 547 DGPSHK-MEQFLKRNYGVERLVRQNNNFAVSPKFFTF 654
           D   HK ++ F   NY  E+L+ Q  N   S  FF +
Sbjct: 177 DPVDHKSLKNFYSSNYFAEKLIDQLKNREKSQSFFAY 213


>SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 403

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 8/91 (8%)
 Frame = -1

Query: 633 NSEIVVLADETLHAVVALQELLHLVRGPVD-G*CVDVA---LRVLEHEIEKFLPASGALA 466
           NS   V+ D + H+V   +   H    PV+    +D+    L +LE +    +P  G L 
Sbjct: 218 NSSSSVIPDSSFHSVACYRASSHYKEAPVEKSIDIDIIQNNLSLLEEDSWTSVPIQGELV 277

Query: 465 ----VADHVEVEDAERLQLAHLFLVVEQKQV 385
               +  H+++   +R+  +H  L  E++Q+
Sbjct: 278 ELNKLLQHLQLLQNQRI-TSHNVLSDEERQI 307


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,994,319
Number of Sequences: 5004
Number of extensions: 59465
Number of successful extensions: 154
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)