Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1340
(804 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0130 - 21104668-21105030,21106045-21106203,21106265-21107032 31 0.81
05_05_0392 + 24629528-24630442 31 1.4
11_04_0387 - 17037150-17037661,17038194-17038324,17038395-17038453 30 1.9
02_01_0486 - 3495792-3496034,3496862-3496934,3497128-3497422,349... 30 1.9
01_06_0383 - 28903620-28904077,28904172-28904259 30 1.9
08_02_0610 + 19307537-19308011,19308187-19310846 30 2.5
08_02_1402 - 26786011-26786128,26786263-26786516,26787505-267877... 29 4.3
07_01_0853 + 6982185-6983593,6985926-6986497,6987139-6988439 29 4.3
06_03_0857 + 25443251-25444429 29 4.3
08_02_0747 - 20728073-20728081,20728167-20728353,20728810-207289... 29 5.7
12_02_1035 - 25570009-25571241,25571940-25573709,25573797-255751... 28 7.6
12_01_0704 + 6061461-6061873,6062149-6062891,6062994-6063451 28 7.6
11_01_0585 - 4642555-4643130,4643805-4644116,4644178-4644876 28 7.6
10_03_0048 - 7360230-7360805,7361480-7361791,7361853-7362179 28 7.6
08_02_1240 + 25504789-25504794,25505421-25505555,25505854-255059... 28 7.6
07_03_0731 - 21031002-21031459,21031562-21032304,21032580-21032992 28 7.6
03_02_0472 - 8737955-8738580,8738704-8738767,8739090-8739239,873... 28 7.6
01_06_1065 - 34238812-34239307,34239583-34240154,34241687-342419... 28 7.6
06_03_0348 + 19790400-19790870 28 10.0
>03_05_0130 - 21104668-21105030,21106045-21106203,21106265-21107032
Length = 429
Score = 31.5 bits (68), Expect = 0.81
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = -2
Query: 800 LGESCR*PRPFPPWITLAMAEGRRGAANRPMTGGSDETGRPALLSSAVVNVKNLGE 633
L + R P P PP +G+R AAN P +G S + R A+ + ++ E
Sbjct: 366 LAAAYRPPPPTPPPTAADRGKGKRPAANTPASGSSSKKSRSDSAGLALERIADIRE 421
>05_05_0392 + 24629528-24630442
Length = 304
Score = 30.7 bits (66), Expect = 1.4
Identities = 19/74 (25%), Positives = 26/74 (35%)
Frame = +1
Query: 580 KRNYGVERLVRQNNNFAVSPKFFTFTTAELNKAGRPVSSLPPVIGRFAAPRRPSAIANVI 759
+R G ER + + A T T G+P V G RR A +
Sbjct: 101 RRAVGAERATSEKSEAASESSVATTATGPERSPGKPARKRAVVSGELGRARRDRGPAAAV 160
Query: 760 HGGNGLGYRQDSPN 801
HG G + SP+
Sbjct: 161 HGAGRPGGGRASPS 174
>11_04_0387 - 17037150-17037661,17038194-17038324,17038395-17038453
Length = 233
Score = 30.3 bits (65), Expect = 1.9
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = +1
Query: 613 QNNNFAVSPKFFTFTTAELNKAGRPVSSLPPVIGRFAAP-RRPSAIANVIHGGNGLG 780
Q N F+V P+ F + RP+ PP F+ R P + GG+GLG
Sbjct: 63 QANQFSVYPQTFPIADQNADALMRPLDRHPPFSISFSGTFREPKQFPFMQDGGSGLG 119
>02_01_0486 -
3495792-3496034,3496862-3496934,3497128-3497422,
3497585-3497759,3498349-3498795,3499994-3500053
Length = 430
Score = 30.3 bits (65), Expect = 1.9
Identities = 19/53 (35%), Positives = 25/53 (47%)
Frame = -2
Query: 779 PRPFPPWITLAMAEGRRGAANRPMTGGSDETGRPALLSSAVVNVKNLGETAKL 621
PRP P T+A +G A + P GG D A+ +V + GET KL
Sbjct: 208 PRPVPVE-TVASNDGIEEAVDAPEDGGEDIPEEDAVCRICLVELNEGGETLKL 259
>01_06_0383 - 28903620-28904077,28904172-28904259
Length = 181
Score = 30.3 bits (65), Expect = 1.9
Identities = 21/53 (39%), Positives = 25/53 (47%)
Frame = +3
Query: 558 AQDGAVPEAQLRRGASRPPKQQFRCFAQVLHVHHGRAQQGRPSGLVAAAGHRP 716
A G+ P+A LRR A PP Q R Q H G P+G+V G RP
Sbjct: 70 AAQGSPPDAALRRPARTPPSPQGRYPPQ--HQQKPAPCSGGPAGVV--GGRRP 118
>08_02_0610 + 19307537-19308011,19308187-19310846
Length = 1044
Score = 29.9 bits (64), Expect = 2.5
Identities = 15/50 (30%), Positives = 19/50 (38%)
Frame = -2
Query: 779 PRPFPPWITLAMAEGRRGAANRPMTGGSDETGRPALLSSAVVNVKNLGET 630
PRP PP + A+ RRGA P+ PA + G T
Sbjct: 897 PRPRPPPMLRVPAQARRGAGRPPLRAPQARAAAPACAARGAAAAATSGRT 946
>08_02_1402 -
26786011-26786128,26786263-26786516,26787505-26787732,
26788920-26789759
Length = 479
Score = 29.1 bits (62), Expect = 4.3
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = +3
Query: 477 RMREETFRFHAQGHGERRPRTSHRRALAQDGAVPEAQ 587
R ET H Q H + PRT R + A G + E Q
Sbjct: 187 RREAETAHPHTQPHSDLSPRTPRRTSAAASGRLQEKQ 223
>07_01_0853 + 6982185-6983593,6985926-6986497,6987139-6988439
Length = 1093
Score = 29.1 bits (62), Expect = 4.3
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +1
Query: 271 TTGEKLRLCPSHVVYILKDKDAKNGEGEAV 360
T EK RL PS+ Y L+ ++AK EG+ V
Sbjct: 364 TKPEKRRLAPSNYRYFLRGQNAKAKEGDLV 393
>06_03_0857 + 25443251-25444429
Length = 392
Score = 29.1 bits (62), Expect = 4.3
Identities = 24/73 (32%), Positives = 28/73 (38%), Gaps = 1/73 (1%)
Frame = +3
Query: 510 QGHGER-RPRTSHRRALAQDGAVPEAQLRRGASRPPKQQFRCFAQVLHVHHGRAQQGRPS 686
+G G R R R+ RRA A A P A PP L V GR ++GR
Sbjct: 201 RGGGARGRGRSRRRRAAA--AAAPSAPASEAPPPPPPSSALVPEPELQVQGGRGERGRGR 258
Query: 687 GLVAAAGHRPVRG 725
G G RG
Sbjct: 259 GRGRGGGRGGRRG 271
>08_02_0747 -
20728073-20728081,20728167-20728353,20728810-20728913,
20729008-20729139,20729583-20729810,20730263-20730358,
20730440-20730511,20730588-20730760,20730947-20731000,
20731086-20731134,20731228-20731326,20731420-20731511,
20731607-20731832,20731927-20732100,20732186-20732809,
20732890-20733033,20733108-20733218,20733516-20733650,
20733963-20733989
Length = 911
Score = 28.7 bits (61), Expect = 5.7
Identities = 20/64 (31%), Positives = 29/64 (45%)
Frame = +1
Query: 517 TESDVHALAIDGPSHKMEQFLKRNYGVERLVRQNNNFAVSPKFFTFTTAELNKAGRPVSS 696
T+ H + P H E + N V + V++NNNF SPK + T + +K P
Sbjct: 472 TQPTTHENSGIEPDH--EPVEENNDDVNQAVQKNNNFTSSPKGNSKTVLDDDKLPIPNEE 529
Query: 697 LPPV 708
PV
Sbjct: 530 FNPV 533
>12_02_1035 -
25570009-25571241,25571940-25573709,25573797-25575118,
25575208-25575555,25576540-25576633
Length = 1588
Score = 28.3 bits (60), Expect = 7.6
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +1
Query: 517 TESDVHALAIDGPSHKMEQFLKRNYGVERLVRQNN 621
+E + I+G SH ME+ ++N +E L+ +NN
Sbjct: 517 SERSMFIARIEGISHTMEKLSEKNVFLENLLSENN 551
>12_01_0704 + 6061461-6061873,6062149-6062891,6062994-6063451
Length = 537
Score = 28.3 bits (60), Expect = 7.6
Identities = 16/56 (28%), Positives = 25/56 (44%)
Frame = -2
Query: 800 LGESCR*PRPFPPWITLAMAEGRRGAANRPMTGGSDETGRPALLSSAVVNVKNLGE 633
L + R P P PP +G+R AAN +G S + R A+ + ++ E
Sbjct: 4 LAAAYRPPPPTPPPTAADRGKGKRPAANTTASGSSSKKSRSDSAGLALERIADIRE 59
>11_01_0585 - 4642555-4643130,4643805-4644116,4644178-4644876
Length = 528
Score = 28.3 bits (60), Expect = 7.6
Identities = 16/56 (28%), Positives = 25/56 (44%)
Frame = -2
Query: 800 LGESCR*PRPFPPWITLAMAEGRRGAANRPMTGGSDETGRPALLSSAVVNVKNLGE 633
L + R P P PP +G+R AAN +G S + R A+ + ++ E
Sbjct: 394 LAAAYRPPPPTPPPTAADRGKGKRPAANTTASGSSSKKSRSDSAGLALERIADIRE 449
>10_03_0048 - 7360230-7360805,7361480-7361791,7361853-7362179
Length = 404
Score = 28.3 bits (60), Expect = 7.6
Identities = 16/56 (28%), Positives = 25/56 (44%)
Frame = -2
Query: 800 LGESCR*PRPFPPWITLAMAEGRRGAANRPMTGGSDETGRPALLSSAVVNVKNLGE 633
L + R P P PP +G+R AAN +G S + R A+ + ++ E
Sbjct: 270 LAAAYRPPPPTPPPTAADRGKGKRPAANTTASGSSSKKSRSDSAGLALERIADIRE 325
>08_02_1240 +
25504789-25504794,25505421-25505555,25505854-25505964,
25506091-25506183,25506264-25506884,25506970-25507143,
25507239-25507464,25507560-25507651,25507744-25507842,
25507936-25507984,25508071-25508124,25508312-25508484,
25508561-25508632,25508713-25508808,25509032-25509048,
25509704-25509875,25509973-25510071,25510381-25510484,
25510940-25511126,25511212-25511220
Length = 862
Score = 28.3 bits (60), Expect = 7.6
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = +1
Query: 553 PSHKMEQFLKRNYGVERLVRQNNNFAVSPKFFTFTTAELNKAGRPVSSLPPV 708
P H E + N V + V++NNNF SPK + T + +K P PV
Sbjct: 459 PDH--EPVEENNDDVNQAVKKNNNFTSSPKGNSKTILDDDKLPIPNEEFNPV 508
>07_03_0731 - 21031002-21031459,21031562-21032304,21032580-21032992
Length = 537
Score = 28.3 bits (60), Expect = 7.6
Identities = 16/56 (28%), Positives = 25/56 (44%)
Frame = -2
Query: 800 LGESCR*PRPFPPWITLAMAEGRRGAANRPMTGGSDETGRPALLSSAVVNVKNLGE 633
L + R P P PP +G+R AAN +G S + R A+ + ++ E
Sbjct: 4 LAAAYRPPPPTPPPTAADRGKGKRPAANTTASGSSSKKSRSDSAGLALERIADIRE 59
>03_02_0472 -
8737955-8738580,8738704-8738767,8739090-8739239,
8739311-8739422,8739686-8739708
Length = 324
Score = 28.3 bits (60), Expect = 7.6
Identities = 19/58 (32%), Positives = 26/58 (44%)
Frame = -2
Query: 380 RPIFSMPTASPSPFFASLSLRIYTTCDGQRRSFSPVVITRLRPCAADEYSPRTSISFD 207
R +S SPSP+ S Y T +RRS+S +R R + Y S S+D
Sbjct: 180 RQSYSPYGRSPSPYGRRRSYSPYDTRGSRRRSYSSYRGSRYRSRSPYRYRRERSCSYD 237
>01_06_1065 -
34238812-34239307,34239583-34240154,34241687-34241998,
34242060-34242386
Length = 568
Score = 28.3 bits (60), Expect = 7.6
Identities = 16/56 (28%), Positives = 25/56 (44%)
Frame = -2
Query: 800 LGESCR*PRPFPPWITLAMAEGRRGAANRPMTGGSDETGRPALLSSAVVNVKNLGE 633
L + R P P PP +G+R AAN +G S + R A+ + ++ E
Sbjct: 270 LAAAYRPPPPTPPPTAADRGKGKRPAANTTASGSSSKKSRSDSAGLALERIADIRE 325
>06_03_0348 + 19790400-19790870
Length = 156
Score = 27.9 bits (59), Expect = 10.0
Identities = 22/65 (33%), Positives = 26/65 (40%), Gaps = 4/65 (6%)
Frame = -2
Query: 800 LGESCR*PRPFPPWITLAMAEGRRGAANRPMTGGSD----ETGRPALLSSAVVNVKNLGE 633
LG S P PPW T + + R GG D ET A S + LGE
Sbjct: 50 LGRSSASPSA-PPWPTALVPAFTYSRSVRRNVGGDDGEEEETAAAAAACSVCLGAFQLGE 108
Query: 632 TAKLL 618
T +LL
Sbjct: 109 TVRLL 113
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,625,430
Number of Sequences: 37544
Number of extensions: 468047
Number of successful extensions: 1569
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1569
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -