Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1340
         (804 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF045644-7|AAC02603.1|  262|Caenorhabditis elegans Mechanosensor...   100   1e-21
U39854-3|AAA81078.2|  263|Caenorhabditis elegans Hypothetical pr...    95   7e-20
Z75552-8|CAD54158.1|  939|Caenorhabditis elegans Hypothetical pr...    31   1.3  
Z75552-7|CAA99943.3|  944|Caenorhabditis elegans Hypothetical pr...    31   1.3  
Z75539-5|CAD54134.1|  939|Caenorhabditis elegans Hypothetical pr...    31   1.3  
Z75539-4|CAA99846.3|  944|Caenorhabditis elegans Hypothetical pr...    31   1.3  
Z79605-8|CAE18060.2|  340|Caenorhabditis elegans Hypothetical pr...    30   1.7  
AL034489-11|CAL49453.1|  340|Caenorhabditis elegans Hypothetical...    30   1.7  
Z50806-4|CAB60296.2| 1214|Caenorhabditis elegans Hypothetical pr...    28   6.8  
U80445-11|AAB37801.2|  479|Caenorhabditis elegans Hypothetical p...    28   6.8  
U32305-20|AAK18863.1|  796|Caenorhabditis elegans Worm armadillo...    28   9.0  
AF013951-1|AAC47748.1|  796|Caenorhabditis elegans wrm-1 protein.      28   9.0  

>AF045644-7|AAC02603.1|  262|Caenorhabditis elegans Mechanosensory
           abnormality protein17 protein.
          Length = 262

 Score =  100 bits (239), Expect = 1e-21
 Identities = 58/162 (35%), Positives = 89/162 (54%), Gaps = 1/162 (0%)
 Frame = +1

Query: 184 VRMLQDSLS-KLIDVLGEYSSAAQGLNRVITTGEKLRLCPSHVVYILKDKDAKNGEGEAV 360
           V+ LQD +  + ID L + S+    L   +TT EKL +     +Y+    D +      +
Sbjct: 23  VKQLQDPIVYEAIDNLAKLSAHCLQLRTPLTTCEKL-INSDSTLYLSWKYDEEEKVSRLM 81

Query: 361 GMLKIGRKHLFLFDDKEQVRELEPLCVLDFYVVCNRQRTGCGKKLFDFMLKDTESDVHAL 540
           G  K+GRK LFL+D + Q  E E LC+LDFYV  + QR G G+++ D+M     ++ + L
Sbjct: 82  GFAKVGRKKLFLYDSQMQTYEGEILCLLDFYVHFSCQRQGVGQQILDYMFSQEHTEPYQL 141

Query: 541 AIDGPSHKMEQFLKRNYGVERLVRQNNNFAVSPKFFTFTTAE 666
           A+D PS  +  F+ + YG+ + V QN NF V  + F   +AE
Sbjct: 142 ALDNPSVTLLGFMSQKYGLIKPVWQNTNFVVFEELFLALSAE 183


>U39854-3|AAA81078.2|  263|Caenorhabditis elegans Hypothetical
           protein W06B11.1 protein.
          Length = 263

 Score = 94.7 bits (225), Expect = 7e-20
 Identities = 57/151 (37%), Positives = 87/151 (57%), Gaps = 2/151 (1%)
 Frame = +1

Query: 202 SLSKLIDVLGEYSSAAQGLNRVITTGEKL-RLCPSHVVYILKDKDAKNGEGEAV-GMLKI 375
           ++++ ID LGE SS   G  RVIT  +K+         YI+ +K   NG    + G+L++
Sbjct: 33  AVAQSIDCLGEMSSKFHGWKRVITMYDKIVDHDEEQTTYIMWEK--VNGSKSILKGLLRV 90

Query: 376 GRKHLFLFDDKEQVRELEPLCVLDFYVVCNRQRTGCGKKLFDFMLKDTESDVHALAIDGP 555
           G K L+L D+++     + +C+LDF+VV   QR+G G K+FD MLK     V   A D P
Sbjct: 91  GYKTLYLTDNEQNQYMEKAMCILDFFVVPTEQRSGNGFKMFDEMLKAENVTVDQCAFDKP 150

Query: 556 SHKMEQFLKRNYGVERLVRQNNNFAVSPKFF 648
           S  ++QFL++ Y  + LV Q+N +A+   FF
Sbjct: 151 SAALQQFLEKYYDRKDLVWQSNKYALCSNFF 181


>Z75552-8|CAD54158.1|  939|Caenorhabditis elegans Hypothetical
           protein F28C1.3b protein.
          Length = 939

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = +1

Query: 604 LVRQNNNFAVSPKFFTFTTAELNKAGRPVSSLPPVIGRFAAPRRPSAIA 750
           +VR+   F+VSP    F  A  + A    +S P      A P RPS +A
Sbjct: 694 VVRKLRRFSVSPSSSVFDVATTSSAASSTASSPIPENSIALPVRPSTLA 742


>Z75552-7|CAA99943.3|  944|Caenorhabditis elegans Hypothetical
           protein F28C1.3a protein.
          Length = 944

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = +1

Query: 604 LVRQNNNFAVSPKFFTFTTAELNKAGRPVSSLPPVIGRFAAPRRPSAIA 750
           +VR+   F+VSP    F  A  + A    +S P      A P RPS +A
Sbjct: 699 VVRKLRRFSVSPSSSVFDVATTSSAASSTASSPIPENSIALPVRPSTLA 747


>Z75539-5|CAD54134.1|  939|Caenorhabditis elegans Hypothetical
           protein F28C1.3b protein.
          Length = 939

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = +1

Query: 604 LVRQNNNFAVSPKFFTFTTAELNKAGRPVSSLPPVIGRFAAPRRPSAIA 750
           +VR+   F+VSP    F  A  + A    +S P      A P RPS +A
Sbjct: 694 VVRKLRRFSVSPSSSVFDVATTSSAASSTASSPIPENSIALPVRPSTLA 742


>Z75539-4|CAA99846.3|  944|Caenorhabditis elegans Hypothetical
           protein F28C1.3a protein.
          Length = 944

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = +1

Query: 604 LVRQNNNFAVSPKFFTFTTAELNKAGRPVSSLPPVIGRFAAPRRPSAIA 750
           +VR+   F+VSP    F  A  + A    +S P      A P RPS +A
Sbjct: 699 VVRKLRRFSVSPSSSVFDVATTSSAASSTASSPIPENSIALPVRPSTLA 747


>Z79605-8|CAE18060.2|  340|Caenorhabditis elegans Hypothetical
           protein ZK678.8 protein.
          Length = 340

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 12/27 (44%), Positives = 20/27 (74%)
 Frame = -1

Query: 627 EIVVLADETLHAVVALQELLHLVRGPV 547
           +IVV  D+T+    AL+++LH+ +GPV
Sbjct: 196 QIVVTNDDTIVNATALEQVLHMKKGPV 222


>AL034489-11|CAL49453.1|  340|Caenorhabditis elegans Hypothetical
           protein ZK678.8 protein.
          Length = 340

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 12/27 (44%), Positives = 20/27 (74%)
 Frame = -1

Query: 627 EIVVLADETLHAVVALQELLHLVRGPV 547
           +IVV  D+T+    AL+++LH+ +GPV
Sbjct: 196 QIVVTNDDTIVNATALEQVLHMKKGPV 222


>Z50806-4|CAB60296.2| 1214|Caenorhabditis elegans Hypothetical
           protein M79.1b protein.
          Length = 1214

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 26/93 (27%), Positives = 41/93 (44%)
 Frame = -2

Query: 386 CLRPIFSMPTASPSPFFASLSLRIYTTCDGQRRSFSPVVITRLRPCAADEYSPRTSISFD 207
           C  P+F  P ASP    + +S ++    +   RS SP+++   RP       P +  S  
Sbjct: 19  CEDPVFDQPVASPK---SEISSKL---AEEIERSKSPLILEMFRPTFDTFRPPNSDSSTF 72

Query: 206 RLSCSILTVLMFPSKVSVIKL*SMRVISSLNIS 108
           R S S   ++   S  SV  +  M  +SS + S
Sbjct: 73  RGSQSREDLVACSSMNSVNNVHDMNTVSSSSSS 105


>U80445-11|AAB37801.2|  479|Caenorhabditis elegans Hypothetical
           protein C50F2.8 protein.
          Length = 479

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 2/111 (1%)
 Frame = +1

Query: 256 LNRVITTGEKLRLCPSHVVYILKDKDAKNGEGEAVGMLKIGRKHLFLFDDKEQVR--ELE 429
           L+++ +  E L  C   ++  +++ + KNG+ +     K         D KE+    E+E
Sbjct: 7   LSQLRSNAENLSRCLHVLLEKIENIEKKNGKEQDADSTKSNGTSSSNKDGKEKFEQVEIE 66

Query: 430 PLCVLDFYVVCNRQRTGCGKKLFDFMLKDTESDVHALAIDGPSHKMEQFLK 582
               +D        +TG  K+        T    HALA+DGPS  M   L+
Sbjct: 67  EKTEID-------PKTGLKKRTIVTERVLTTKTFHALALDGPSPTMTPILR 110


>U32305-20|AAK18863.1|  796|Caenorhabditis elegans Worm armadillo
           protein 1 protein.
          Length = 796

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -1

Query: 438 AERLQLAHLFLVVEQKQVLATNLQHADCLALTVFC 334
           +ERL +  LF  + Q +V+  +L  +   ALTVFC
Sbjct: 375 SERLGVVSLFHQIMQNEVIHEDLLWSTMQALTVFC 409


>AF013951-1|AAC47748.1|  796|Caenorhabditis elegans wrm-1 protein.
          Length = 796

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -1

Query: 438 AERLQLAHLFLVVEQKQVLATNLQHADCLALTVFC 334
           +ERL +  LF  + Q +V+  +L  +   ALTVFC
Sbjct: 375 SERLGVVSLFHQIMQNEVIHEDLLWSTMQALTVFC 409


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,266,363
Number of Sequences: 27780
Number of extensions: 360426
Number of successful extensions: 986
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 984
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1966828226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)