Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1340
         (804 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    24   1.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.3  
DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    22   7.7  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    22   7.7  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    22   7.7  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +2

Query: 227 WENIHQLHKASTV*SLLGKNFAS 295
           WE +H  H  ST+ S  G  F +
Sbjct: 208 WEIVHMSHSESTIDSKFGLGFTT 230


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +3

Query: 495  FRFHAQGHGERRPRTSHRRALAQDGAVPEAQLRR 596
            F F A  H   R RT+    +  + A PE +L R
Sbjct: 1143 FEFRAALHEALRGRTAQLIIVQAENAYPEVELDR 1176


>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -2

Query: 326 SLRIYTTCDGQRRSFSPVVITR 261
           S  I++ CDG+ + F P V+ +
Sbjct: 39  SNEIFSRCDGRCQRFCPNVVPK 60


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -2

Query: 326 SLRIYTTCDGQRRSFSPVVITR 261
           S  I++ CDG+ + F P V+ +
Sbjct: 39  SNEIFSRCDGRCQRFCPNVVPK 60


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -2

Query: 140 SMRVISSLNISFTGTIHSIAKILLPNA 60
           S+ +   + +SFT T+ SI    +P+A
Sbjct: 418 SLGIGEVITVSFTATLASIGAASIPSA 444


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,410
Number of Sequences: 438
Number of extensions: 4582
Number of successful extensions: 97
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25489170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)